Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001833A_C01 KMC001833A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52266.1|AC019018_3 putative deoxyoctulonosic acid syntheta... 184 5e-46
emb|CAB89846.1| CMP-KDO synthetase [Zea mays] 168 5e-41
emb|CAB89847.1| CMP-KDO synthetase [Zea mays] 161 5e-39
ref|NP_175708.1| CMP-KDO synthetase, putative; protein id: At1g5... 136 2e-31
gb|AAL06487.1|AF411798_1 F14G24.28/F14G24.28 [Arabidopsis thalia... 133 1e-30
>gb|AAG52266.1|AC019018_3 putative deoxyoctulonosic acid synthetase; 116195-114393
[Arabidopsis thaliana] gi|22213935|emb|CAD43603.1|
putative CMP-KDO synthetase [Arabidopsis thaliana]
Length = 290
Score = 184 bits (468), Expect = 5e-46
Identities = 87/101 (86%), Positives = 97/101 (95%)
Frame = -1
Query: 582 NRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQ 403
NRGYAIYFSRGLIP+NKSGKVN FPY+LHLGIQS+D+KFLK+YS+LQPTPLQ EEDLEQ
Sbjct: 190 NRGYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQ 249
Query: 402 LKVLENGYKMKVIKVDLDAHGVDTPEDVEKLESLMRERNLS 280
LKVLENGYKMKVIKVD +AHGVDTP+DVEK+ESLMRERN+S
Sbjct: 250 LKVLENGYKMKVIKVDHEAHGVDTPDDVEKIESLMRERNMS 290
>emb|CAB89846.1| CMP-KDO synthetase [Zea mays]
Length = 298
Score = 168 bits (425), Expect = 5e-41
Identities = 79/100 (79%), Positives = 89/100 (89%)
Frame = -1
Query: 582 NRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQ 403
N GYAIYFSRGLIPFNKSG N ++PYLLHLGI +D+KFLKIY +L PTPLQ+EEDLEQ
Sbjct: 198 NLGYAIYFSRGLIPFNKSGNANPKYPYLLHLGIAGFDSKFLKIYPELPPTPLQMEEDLEQ 257
Query: 402 LKVLENGYKMKVIKVDLDAHGVDTPEDVEKLESLMRERNL 283
LKVLENGY+MKVIKVD DAHGVD PEDVEK+E+LMR RN+
Sbjct: 258 LKVLENGYRMKVIKVDHDAHGVDAPEDVEKIEALMRTRNI 297
>emb|CAB89847.1| CMP-KDO synthetase [Zea mays]
Length = 236
Score = 161 bits (408), Expect = 5e-39
Identities = 76/95 (80%), Positives = 85/95 (89%)
Frame = -1
Query: 582 NRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQ 403
N GYAIYFSRGLIPFNKSG N ++PYLLHLGI +D+KFLKIY +L PTPLQ+EEDLEQ
Sbjct: 142 NLGYAIYFSRGLIPFNKSGNANPKYPYLLHLGIAGFDSKFLKIYPELPPTPLQMEEDLEQ 201
Query: 402 LKVLENGYKMKVIKVDLDAHGVDTPEDVEKLESLM 298
LKVLENGY+MKVIKVD DAHGVD PEDVEK+E+LM
Sbjct: 202 LKVLENGYRMKVIKVDHDAHGVDAPEDVEKIEALM 236
>ref|NP_175708.1| CMP-KDO synthetase, putative; protein id: At1g53000.1 [Arabidopsis
thaliana]
Length = 262
Score = 136 bits (342), Expect = 2e-31
Identities = 63/73 (86%), Positives = 70/73 (95%)
Frame = -1
Query: 582 NRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQ 403
NRGYAIYFSRGLIP+NKSGKVN FPY+LHLGIQS+D+KFLK+YS+LQPTPLQ EEDLEQ
Sbjct: 190 NRGYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQ 249
Query: 402 LKVLENGYKMKVI 364
LKVLENGYKMKV+
Sbjct: 250 LKVLENGYKMKVM 262
>gb|AAL06487.1|AF411798_1 F14G24.28/F14G24.28 [Arabidopsis thaliana]
gi|23308153|gb|AAN18046.1| At1g53000/F14G24.28
[Arabidopsis thaliana]
Length = 74
Score = 133 bits (335), Expect = 1e-30
Identities = 63/74 (85%), Positives = 72/74 (97%)
Frame = -1
Query: 501 LLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQLKVLENGYKMKVIKVDLDAHGVDTPED 322
+LHLGIQS+D+KFLK+YS+LQPTPLQ EEDLEQLKVLENGYKMKVIKVD +AHGVDTP+D
Sbjct: 1 MLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPDD 60
Query: 321 VEKLESLMRERNLS 280
VEK+ESLMRERN+S
Sbjct: 61 VEKIESLMRERNMS 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,847,710
Number of Sequences: 1393205
Number of extensions: 8404990
Number of successful extensions: 21639
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 20996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21544
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
