Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001830A_C01 KMC001830A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182310.1| CONSTANS B-box zinc finger family protein; prot... 82 3e-15
pir||JE0114 zinc-finger protein C60910 [imported] - rice gi|3618... 71 9e-12
gb|AAN72078.1| putative CONSTANS-like B-box zinc finger protein ... 70 1e-11
ref|NP_180908.2| CONSTANS B-box zinc finger family protein; prot... 70 1e-11
gb|AAM91524.1| putative CONSTANS-like B-box zinc finger protein ... 70 1e-11
>ref|NP_182310.1| CONSTANS B-box zinc finger family protein; protein id: At2g47890.1
[Arabidopsis thaliana] gi|17432989|sp|O82256|COLA_ARATH
Zinc finger protein constans-like 10
gi|25409069|pir||G84920 hypothetical protein At2g47890
[imported] - Arabidopsis thaliana
gi|3738301|gb|AAC63643.1| putative zinc-finger protein
(B-box zinc finger domain) [Arabidopsis thaliana]
gi|20197548|gb|AAM15120.1| putative zinc-finger protein
(B-box zinc finger domain) [Arabidopsis thaliana]
Length = 332
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = -1
Query: 469 TTPRPVPYELASQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 302
T+ R + +E+ S ER+SAL RYK+KKK+RRYEKHIRYESRK RAESR RIRGRFA+
Sbjct: 273 TSTRSMTHEINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
>pir||JE0114 zinc-finger protein C60910 [imported] - rice
gi|3618308|dbj|BAA33200.1| zinc finger protein [Oryza
sativa (japonica cultivar-group)]
Length = 403
Score = 70.9 bits (172), Expect = 9e-12
Identities = 33/72 (45%), Positives = 50/72 (68%)
Frame = -1
Query: 514 NEGQPSNSIKSETLPTTPRPVPYELASQERDSALLRYKQKKKTRRYEKHIRYESRKARAE 335
++ P N + LP P VP +R+ + RYK+K+KTRR+++ +RYESRKARA+
Sbjct: 333 HQTNPGNGTPMQVLPKMPEFVP----CPDRNLVISRYKEKRKTRRFDRQVRYESRKARAD 388
Query: 334 SRIRIRGRFAQM 299
SR+RI+GRFA++
Sbjct: 389 SRLRIKGRFAKV 400
>gb|AAN72078.1| putative CONSTANS-like B-box zinc finger protein [Arabidopsis
thaliana]
Length = 402
Score = 70.5 bits (171), Expect = 1e-11
Identities = 31/48 (64%), Positives = 42/48 (86%)
Frame = -1
Query: 445 ELASQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 302
E +Q RD+A+ RYK+KKKTRRY+K IRYE+RKARAE+R+R++GRF +
Sbjct: 351 EQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398
>ref|NP_180908.2| CONSTANS B-box zinc finger family protein; protein id: At2g33500.1
[Arabidopsis thaliana]
Length = 401
Score = 70.5 bits (171), Expect = 1e-11
Identities = 31/48 (64%), Positives = 42/48 (86%)
Frame = -1
Query: 445 ELASQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 302
E +Q RD+A+ RYK+KKKTRRY+K IRYE+RKARAE+R+R++GRF +
Sbjct: 350 EQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 397
>gb|AAM91524.1| putative CONSTANS-like B-box zinc finger protein [Arabidopsis
thaliana]
Length = 186
Score = 70.5 bits (171), Expect = 1e-11
Identities = 31/48 (64%), Positives = 42/48 (86%)
Frame = -1
Query: 445 ELASQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 302
E +Q RD+A+ RYK+KKKTRRY+K IRYE+RKARAE+R+R++GRF +
Sbjct: 135 EQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,911,481
Number of Sequences: 1393205
Number of extensions: 9710859
Number of successful extensions: 24995
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 24290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24955
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
