Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001829A_C01 KMC001829A_c01
(711 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC23632.2| actin 3 [Arabidopsis thaliana] 211 8e-54
sp|P30171|ACTB_SOLTU ACTIN 97 gi|100417|pir||S20098 actin 97 - p... 211 8e-54
ref|NP_187818.1| actin 11 (ACT11); protein id: At3g12110.1 [Arab... 211 8e-54
pir||T51177 actin [imported] - Striga asiatica gi|1531672|gb|AAC... 211 8e-54
ref|NP_566988.1| actin (ACT3); protein id: At3g53750.1, supporte... 211 8e-54
>gb|AAC23632.2| actin 3 [Arabidopsis thaliana]
Length = 332
Score = 211 bits (537), Expect = 8e-54
Identities = 103/104 (99%), Positives = 104/104 (99%)
Frame = -1
Query: 711 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVA 532
AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI+ALAPSSMKIKVVA
Sbjct: 229 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA 288
Query: 531 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 400
PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 289 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332
>sp|P30171|ACTB_SOLTU ACTIN 97 gi|100417|pir||S20098 actin 97 - potato
gi|21544|emb|CAA39280.1| actin [Solanum tuberosum]
Length = 377
Score = 211 bits (537), Expect = 8e-54
Identities = 103/104 (99%), Positives = 104/104 (99%)
Frame = -1
Query: 711 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVA 532
AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI+ALAPSSMKIKVVA
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA 333
Query: 531 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 400
PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 334 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>ref|NP_187818.1| actin 11 (ACT11); protein id: At3g12110.1 [Arabidopsis thaliana]
gi|1703129|sp|P53496|ACTB_ARATH Actin 11
gi|2129522|pir||S68109 actin 11 - Arabidopsis thaliana
gi|1002533|gb|AAB39404.1| actin-11
gi|9294108|dbj|BAB01959.1| actin 11 [Arabidopsis
thaliana] gi|12322007|gb|AAG51045.1|AC069473_7 actin 11
(ACT11); 24016-22523 [Arabidopsis thaliana]
gi|21593328|gb|AAM65277.1| actin 11 (ACT11) [Arabidopsis
thaliana] gi|26451746|dbj|BAC42968.1| unknown protein
[Arabidopsis thaliana] gi|28973377|gb|AAO64013.1|
putative actin 11 (ACT11) [Arabidopsis thaliana]
Length = 377
Score = 211 bits (537), Expect = 8e-54
Identities = 103/104 (99%), Positives = 104/104 (99%)
Frame = -1
Query: 711 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVA 532
AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI+ALAPSSMKIKVVA
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA 333
Query: 531 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 400
PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 334 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>pir||T51177 actin [imported] - Striga asiatica gi|1531672|gb|AAC49651.1| actin
[Striga asiatica]
Length = 377
Score = 211 bits (537), Expect = 8e-54
Identities = 103/104 (99%), Positives = 104/104 (99%)
Frame = -1
Query: 711 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVA 532
AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI+ALAPSSMKIKVVA
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA 333
Query: 531 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 400
PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 334 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>ref|NP_566988.1| actin (ACT3); protein id: At3g53750.1, supported by cDNA: 25785.,
supported by cDNA: gi_15146303 [Arabidopsis thaliana]
gi|22326216|ref|NP_565867.2| actin 3; protein id:
At2g37620.1, supported by cDNA: 19581., supported by
cDNA: gi_18650647, supported by cDNA: gi_20147380
[Arabidopsis thaliana] gi|22002028|sp|P10671|ACT1_ARATH
Actin 1/3 gi|2129526|pir||S68112 actin 3 [imported] -
Arabidopsis thaliana gi|1145695|gb|AAA98562.1| actin
gi|15146304|gb|AAK83635.1| AT3g53750/F5K20_50
[Arabidopsis thaliana] gi|18650648|gb|AAL75893.1|
At2g37620/F13M22.12 [Arabidopsis thaliana]
gi|20147381|gb|AAM10400.1| At2g37620/F13M22.12
[Arabidopsis thaliana] gi|21554576|gb|AAM63620.1| actin
(ACT3) [Arabidopsis thaliana] gi|25090278|gb|AAN72268.1|
At3g53750/F5K20_50 [Arabidopsis thaliana]
Length = 377
Score = 211 bits (537), Expect = 8e-54
Identities = 103/104 (99%), Positives = 104/104 (99%)
Frame = -1
Query: 711 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVA 532
AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI+ALAPSSMKIKVVA
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA 333
Query: 531 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 400
PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 334 PPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,654,121
Number of Sequences: 1393205
Number of extensions: 13657886
Number of successful extensions: 38514
Number of sequences better than 10.0: 1345
Number of HSP's better than 10.0 without gapping: 36039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38253
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
