Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001828A_C01 KMC001828A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61439.1| unknown [Arabidopsis thaliana] 84 8e-16
ref|NP_566721.1| expressed protein; protein id: At3g22990.1, sup... 84 8e-16
gb|AAK55772.1|AC079038_6 Unknown protein [Oryza sativa] 75 5e-13
gb|AAA64594.1| G protein-coupled receptor 31 8.0
ref|NP_005272.1| G protein-coupled receptor 3; adenylate cyclase... 31 8.0
>gb|AAM61439.1| unknown [Arabidopsis thaliana]
Length = 460
Score = 84.3 bits (207), Expect = 8e-16
Identities = 39/50 (78%), Positives = 47/50 (94%)
Frame = -3
Query: 529 NRTLLLAYENAFAEILFTEGRYSDTFARILYELTSRPSNKVATARGIWGM 380
NR LLLAYENAFAE+LF EG+YSD+FARILYELT+R +++VA+ARGIWGM
Sbjct: 411 NRGLLLAYENAFAELLFQEGKYSDSFARILYELTARSNSRVASARGIWGM 460
>ref|NP_566721.1| expressed protein; protein id: At3g22990.1, supported by cDNA:
120050., supported by cDNA: gi_18176264, supported by
cDNA: gi_20465316 [Arabidopsis thaliana]
gi|9294188|dbj|BAB02090.1| gene_id:MXC7.2~unknown
protein [Arabidopsis thaliana]
gi|18176265|gb|AAL60013.1| unknown protein [Arabidopsis
thaliana] gi|20465317|gb|AAM20062.1| unknown protein
[Arabidopsis thaliana]
Length = 460
Score = 84.3 bits (207), Expect = 8e-16
Identities = 39/50 (78%), Positives = 47/50 (94%)
Frame = -3
Query: 529 NRTLLLAYENAFAEILFTEGRYSDTFARILYELTSRPSNKVATARGIWGM 380
NR LLLAYENAFAE+LF EG+YSD+FARILYELT+R +++VA+ARGIWGM
Sbjct: 411 NRGLLLAYENAFAELLFQEGKYSDSFARILYELTARSNSRVASARGIWGM 460
>gb|AAK55772.1|AC079038_6 Unknown protein [Oryza sativa]
Length = 460
Score = 75.1 bits (183), Expect = 5e-13
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = -3
Query: 529 NRTLLLAYENAFAEILFTEGRYSDTFARILYELTSRPSNKVATARGIWG 383
NR LL +EN FAEIL +EG+YSDTFARILYELT+RPSNKV + IWG
Sbjct: 409 NRMHLLVHENTFAEILTSEGKYSDTFARILYELTARPSNKVTAGQAIWG 457
>gb|AAA64594.1| G protein-coupled receptor
Length = 292
Score = 31.2 bits (69), Expect = 8.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 352 LQQLTRFGVTYPICHELLPLYYLVWMLVHTISLQTYQSICPL-----*KVSLQKH 501
L LT GV YP+ L + + + +V I LQ Y IC + +++LQ+H
Sbjct: 178 LDGLTTCGVVYPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRH 232
>ref|NP_005272.1| G protein-coupled receptor 3; adenylate cyclase constitutive
activator [Homo sapiens] gi|1170006|sp|P46089|GPR3_HUMAN
Probable G protein-coupled receptor GPR3 (ACCA orphan
receptor) gi|1082385|pir||A55689 G protein-coupled
receptor 3 - human gi|602312|gb|AAA73560.1| G
protein-coupled receptor GPR3 gi|604504|gb|AAB60402.1|
putative GPR3 G protein-coupled receptor, ligand unknown
gi|1061126|emb|CAA58787.1| hACCA orphan receptor [Homo
sapiens] gi|11595505|emb|CAC18517.1| dJ144C9.1 (G
protein-coupled receptor 3) [Homo sapiens]
gi|21618433|gb|AAH32702.1| G protein-coupled receptor 3
[Homo sapiens]
Length = 330
Score = 31.2 bits (69), Expect = 8.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 352 LQQLTRFGVTYPICHELLPLYYLVWMLVHTISLQTYQSICPL-----*KVSLQKH 501
L LT GV YP+ L + + + +V I LQ Y IC + +++LQ+H
Sbjct: 178 LDGLTTCGVVYPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRH 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,584,689
Number of Sequences: 1393205
Number of extensions: 9004624
Number of successful extensions: 20855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20832
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
