Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001827A_C01 KMC001827A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component beta subu... 94 4e-32
gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 ... 94 2e-18
gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 ... 93 3e-18
gb|ZP_00016551.1| hypothetical protein [Rhodospirillum rubrum] 65 6e-18
gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 ... 92 7e-18
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B) gi|7431574|pir||T06532 pyruvate
dehydrogenase (lipoamide) (EC 1.2.4.1) beta chain -
garden pea gi|1336097|gb|AAB01223.1| pyruvate
dehydrogenase E1beta
Length = 359
Score = 94.4 bits (233), Expect(2) = 4e-32
Identities = 45/47 (95%), Positives = 45/47 (95%)
Frame = -1
Query: 637 TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMP 497
TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDA VERI GADVPMP
Sbjct: 279 TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMP 325
Score = 65.9 bits (159), Expect(2) = 4e-32
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = -2
Query: 516 GLMFPCPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA 394
G P PYA NLER+ VP VEDIVRAAKRAC+RSVPLAAAA
Sbjct: 319 GADVPMPYAGNLERLVVPHVEDIVRAAKRACHRSVPLAAAA 359
>gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays]
Length = 374
Score = 93.6 bits (231), Expect = 2e-18
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = -1
Query: 637 TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMP 497
TNRLVTVEEGFPQHG+GAEIC SV+EESF YLDAPVERIAGADVPMP
Sbjct: 294 TNRLVTVEEGFPQHGIGAEICMSVVEESFAYLDAPVERIAGADVPMP 340
Score = 71.6 bits (174), Expect = 8e-12
Identities = 34/46 (73%), Positives = 39/46 (83%)
Frame = -2
Query: 531 LRELLGLMFPCPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA 394
+ + G P PYAANLERMAVPQV+DIVRAAKRACYR+VP+AAAA
Sbjct: 329 VERIAGADVPMPYAANLERMAVPQVDDIVRAAKRACYRAVPMAAAA 374
>gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 [Zea mays]
Length = 374
Score = 92.8 bits (229), Expect = 3e-18
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = -1
Query: 637 TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMP 497
TNRLVTVEEGFPQHG+GAEIC SV+EESF YLDAPVERIAGADVPMP
Sbjct: 294 TNRLVTVEEGFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMP 340
Score = 71.6 bits (174), Expect = 8e-12
Identities = 34/46 (73%), Positives = 39/46 (83%)
Frame = -2
Query: 531 LRELLGLMFPCPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA 394
+ + G P PYAANLERMAVPQV+DIVRAAKRACYR+VP+AAAA
Sbjct: 329 VERIAGADVPMPYAANLERMAVPQVDDIVRAAKRACYRAVPMAAAA 374
>gb|ZP_00016551.1| hypothetical protein [Rhodospirillum rubrum]
Length = 468
Score = 64.7 bits (156), Expect(2) = 6e-18
Identities = 30/47 (63%), Positives = 37/47 (77%)
Frame = -1
Query: 637 TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMP 497
TNR VT+EEG+P G+GAEI +++E +F YLDAPV RI G DVPMP
Sbjct: 395 TNRCVTLEEGWPFAGIGAEIGMTIMENAFDYLDAPVIRITGEDVPMP 441
Score = 47.8 bits (112), Expect(2) = 6e-18
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -2
Query: 504 PCPYAANLERMAVPQVEDIVRAAKRACYRS 415
P PYAANLE++A+P +E +V+AAK ACY+S
Sbjct: 439 PMPYAANLEKLALPSIEAVVKAAKAACYKS 468
>gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 [Zea mays]
Length = 373
Score = 91.7 bits (226), Expect = 7e-18
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -1
Query: 637 TNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMP 497
TNRLVTVEEGFPQHG+GAEIC SV+E+SF YLDAPVERIAGADVPMP
Sbjct: 292 TNRLVTVEEGFPQHGIGAEICMSVVEDSFEYLDAPVERIAGADVPMP 338
Score = 65.5 bits (158), Expect = 6e-10
Identities = 33/47 (70%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = -2
Query: 531 LRELLGLMFPCPYAANLERMAVPQVEDIVRAAKRACYR-SVPLAAAA 394
+ + G P PYAANLERMAVPQV+DIVRAAKRACYR +VP+AA A
Sbjct: 327 VERIAGADVPMPYAANLERMAVPQVDDIVRAAKRACYRAAVPMAATA 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,713,522
Number of Sequences: 1393205
Number of extensions: 12871054
Number of successful extensions: 37370
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 35465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37256
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
