Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001824A_C02 KMC001824A_c02
(762 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180756.2| callose synthase (1,3-beta-glucan synthase) fam... 35 1.5
ref|NP_563743.1| callose synthase (CalS1), (1,3-beta-glucan synt... 34 2.0
gb|AAK37413.1|AF237733_1 callose synthase 1 catalytic subunit [A... 34 2.0
ref|NP_177028.1| hypothetical protein; protein id: At1g68610.1 [... 34 2.6
ref|NP_196804.1| callose synthase (1,3-beta-glucan synthase) fam... 34 2.6
>ref|NP_180756.2| callose synthase (1,3-beta-glucan synthase) family; protein id:
At2g31960.1 [Arabidopsis thaliana]
Length = 1959
Score = 34.7 bits (78), Expect = 1.5
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 467 FKNNQKYLKHASPQTSLWLNQKAHFIKRPKSKGPEIYIYIYGHASDLT-QQTCMN*ELHH 643
FKN +K+ K+ ++SLWL +++ K +Y+ I+G A++L C+ HH
Sbjct: 289 FKNYKKWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWGEAANLRFLPECLCYIYHH 348
Query: 644 MHACTHPHFNGSCSVPLWERLK 709
M + GS S E +K
Sbjct: 349 MAFELYGMLAGSVSPMTGEHVK 370
>ref|NP_563743.1| callose synthase (CalS1), (1,3-beta-glucan synthase); protein id:
At1g05570.1 [Arabidopsis thaliana]
Length = 1922
Score = 34.3 bits (77), Expect = 2.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 467 FKNNQKYLKHASPQTSLWLNQKAHFIKRPKSKGPEIYIYIYGHASDLT-QQTCMN*ELHH 643
F+N +K+ K+ ++SLWL +++ K +Y+ I+G A++L C+ HH
Sbjct: 261 FRNYKKWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWGEAANLRFMPECLCYIYHH 320
Query: 644 MHACTHPHFNGSCSVPLWERLK 709
M + GS S E +K
Sbjct: 321 MAFELYGMLAGSVSPMTGEHVK 342
>gb|AAK37413.1|AF237733_1 callose synthase 1 catalytic subunit [Arabidopsis thaliana]
Length = 1950
Score = 34.3 bits (77), Expect = 2.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 467 FKNNQKYLKHASPQTSLWLNQKAHFIKRPKSKGPEIYIYIYGHASDLT-QQTCMN*ELHH 643
F+N +K+ K+ ++SLWL +++ K +Y+ I+G A++L C+ HH
Sbjct: 289 FRNYKKWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWGEAANLRFMPECLCYIYHH 348
Query: 644 MHACTHPHFNGSCSVPLWERLK 709
M + GS S E +K
Sbjct: 349 MAFELYGMLAGSVSPMTGEHVK 370
>ref|NP_177028.1| hypothetical protein; protein id: At1g68610.1 [Arabidopsis
thaliana] gi|25372843|pir||E96710 hypothetical protein
F24J5.15 [imported] - Arabidopsis thaliana
gi|5734716|gb|AAD49981.1|AC008075_14 Simialr to
gb|AF049928 PGP224 protein from Petunia x hybrida.
[Arabidopsis thaliana]
Length = 160
Score = 33.9 bits (76), Expect = 2.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 758 IGWHGNVEPQTRGVAMTSTAPTVEQSMTR 672
IGWHGN+E R A T +AP ++ M+R
Sbjct: 130 IGWHGNMERHARLAASTPSAPPLQAPMSR 158
>ref|NP_196804.1| callose synthase (1,3-beta-glucan synthase) family; protein id:
At5g13000.1 [Arabidopsis thaliana]
gi|11357214|pir||T49914 callose synthase catalytic
subunit-like protein - Arabidopsis thaliana
gi|7630056|emb|CAB88264.1| callose synthase catalytic
subunit-like protein [Arabidopsis thaliana]
Length = 1963
Score = 33.9 bits (76), Expect = 2.6
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 467 FKNNQKYLKHASPQTSLWLNQKAHFIKRPKSKGPEIYIYIYGHASDLT-QQTCMN*ELHH 643
FKN +K+ K+ ++SLWL +++ K +Y+ I+G A++L C+ HH
Sbjct: 305 FKNYKKWCKYLGRKSSLWLPTIQQEMQQRKLLYMALYLLIWGEAANLRFMPECLCYIYHH 364
Query: 644 MHACTHPHFNGSCSVPLWERLK 709
M + G+ S E +K
Sbjct: 365 MAFELYGMLAGNVSPMTGENVK 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,627,102
Number of Sequences: 1393205
Number of extensions: 15252684
Number of successful extensions: 41114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 39450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41073
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
