Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001822A_C01 KMC001822A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL58949.1|AF462864_1 AT5g44100/MLN1_2 [Arabidopsis thaliana] 49 5e-05
ref|NP_199223.1| casein kinase I; protein id: At5g44100.1, suppo... 49 5e-05
ref|NP_567812.1| protein kinase ADK1-like protein; protein id: A... 33 2.6
gb|AAM61183.1| protein kinase ADK1-like protein [Arabidopsis tha... 33 2.6
>gb|AAL58949.1|AF462864_1 AT5g44100/MLN1_2 [Arabidopsis thaliana]
Length = 476
Score = 48.9 bits (115), Expect = 5e-05
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = -1
Query: 556 SGS-SGRPSNTHHRIQTGYEAKQATLTRNGSIRGTRDDPLRSFEHLNIRK 410
SGS +GRPS T R+Q GYE+K + +R + R TR+D LRSFE L++RK
Sbjct: 428 SGSGNGRPS-TSQRVQAGYESKTLSFSRATAARNTREDQLRSFELLSLRK 476
>ref|NP_199223.1| casein kinase I; protein id: At5g44100.1, supported by cDNA:
gi_18087639 [Arabidopsis thaliana]
gi|9759511|dbj|BAB10977.1| casein kinase I [Arabidopsis
thaliana]
Length = 476
Score = 48.9 bits (115), Expect = 5e-05
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = -1
Query: 556 SGS-SGRPSNTHHRIQTGYEAKQATLTRNGSIRGTRDDPLRSFEHLNIRK 410
SGS +GRPS T R+Q GYE+K + +R + R TR+D LRSFE L++RK
Sbjct: 428 SGSGNGRPS-TSQRVQAGYESKTLSFSRATAARNTREDQLRSFELLSLRK 476
>ref|NP_567812.1| protein kinase ADK1-like protein; protein id: At4g28540.1,
supported by cDNA: 113439., supported by cDNA:
gi_20466497 [Arabidopsis thaliana]
gi|20466498|gb|AAM20566.1| protein kinase ADK1-like
protein [Arabidopsis thaliana]
gi|23198156|gb|AAN15605.1| protein kinase ADK1-like
protein [Arabidopsis thaliana]
Length = 479
Score = 33.1 bits (74), Expect = 2.6
Identities = 27/66 (40%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Frame = -1
Query: 583 SGDYTGRLTSGSSGRPSNTHHRIQ-----TGYEAKQATL---TRNGSIRGTRDDPLRSFE 428
S D + +SG RPS R Q +GYE+K A+ R + R RD+ LRSFE
Sbjct: 415 SRDSSRVASSGGGVRPS-VFQRTQAAAAVSGYESKTASAFNRDRVAASRTARDEALRSFE 473
Query: 427 HLNIRK 410
L+IRK
Sbjct: 474 LLSIRK 479
>gb|AAM61183.1| protein kinase ADK1-like protein [Arabidopsis thaliana]
Length = 475
Score = 33.1 bits (74), Expect = 2.6
Identities = 27/66 (40%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Frame = -1
Query: 583 SGDYTGRLTSGSSGRPSNTHHRIQ-----TGYEAKQATL---TRNGSIRGTRDDPLRSFE 428
S D + +SG RPS R Q +GYE+K A+ R + R RD+ LRSFE
Sbjct: 411 SRDSSRVASSGGGVRPS-VFQRTQAAAAVSGYESKTASAFNRDRVAASRTARDEALRSFE 469
Query: 427 HLNIRK 410
L+IRK
Sbjct: 470 LLSIRK 475
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,021,203
Number of Sequences: 1393205
Number of extensions: 9541645
Number of successful extensions: 17942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17936
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
