Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001816A_C01 KMC001816A_c01
(840 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191859.1| putative protein; protein id: At3g63000.1, supp... 307 1e-82
ref|NP_566118.1| expressed protein; protein id: At2g47970.1, sup... 305 7e-82
dbj|BAB39260.1| P0416G11.10 [Oryza sativa (japonica cultivar-gro... 262 4e-69
dbj|BAB63634.1| P0483G10.28 [Oryza sativa (japonica cultivar-gro... 65 1e-09
ref|XP_203522.1| similar to NPL4 [Rattus norvegicus] [Mus musculus] 50 5e-05
>ref|NP_191859.1| putative protein; protein id: At3g63000.1, supported by cDNA:
gi_14334781, supported by cDNA: gi_15810646 [Arabidopsis
thaliana] gi|11281125|pir||T48089 hypothetical protein
T20O10.100 - Arabidopsis thaliana
gi|7573429|emb|CAB87745.1| putative protein [Arabidopsis
thaliana] gi|14334782|gb|AAK59569.1| unknown protein
[Arabidopsis thaliana] gi|15810647|gb|AAL07248.1|
unknown protein [Arabidopsis thaliana]
Length = 413
Score = 307 bits (787), Expect = 1e-82
Identities = 149/204 (73%), Positives = 179/204 (87%)
Frame = -1
Query: 837 VGFIFTQTVSQAKKDYTLSXREVLQAAEYHAESGLKEWVTAVVKLEVNEETGGADVHFEA 658
VGFIF QTV+Q KK+YTLS EVL AA+ HAES LKEWVTAVVKLE+NE+ GGADVHFE
Sbjct: 211 VGFIFNQTVTQDKKEYTLSNVEVLLAAQLHAESELKEWVTAVVKLEINED-GGADVHFEP 269
Query: 657 FQMSDVCIRLFKEEWFDTDIKEDQDPKLSIMKKEVVVGVKDIKEVDNDFFLVVVKIFDHQ 478
FQMSD+C+RLFKE WF+T+I + DPKLS +KKEVVVGVKD+KEVDNDFFLV+VKI DHQ
Sbjct: 270 FQMSDMCVRLFKEGWFETEIGPEDDPKLSKLKKEVVVGVKDVKEVDNDFFLVLVKILDHQ 329
Query: 477 GPLSTTFPIENRNTQVPMRALKNHLERTKNLPFVKRIADFHLLLVLARFLDLNADVPALT 298
GPLS TFPIENRNTQ MRALK H+ER ++LPFVKRI+DFHLLL +A+FLD+++DVPAL
Sbjct: 330 GPLSCTFPIENRNTQTTMRALKTHMERARSLPFVKRISDFHLLLFVAQFLDVSSDVPALA 389
Query: 297 ECIQTETTVPEGYQILIDSMASAA 226
EC++ ++ VPEGY++LIDSMA+ +
Sbjct: 390 ECVRLQSHVPEGYELLIDSMANTS 413
>ref|NP_566118.1| expressed protein; protein id: At2g47970.1, supported by cDNA:
7887. [Arabidopsis thaliana] gi|25344175|pir||G84921
hypothetical protein At2g47970 [imported] - Arabidopsis
thaliana gi|3738309|gb|AAC63651.1| expressed protein
[Arabidopsis thaliana] gi|20197558|gb|AAM15128.1|
expressed protein [Arabidopsis thaliana]
Length = 413
Score = 305 bits (780), Expect = 7e-82
Identities = 149/202 (73%), Positives = 178/202 (87%)
Frame = -1
Query: 837 VGFIFTQTVSQAKKDYTLSXREVLQAAEYHAESGLKEWVTAVVKLEVNEETGGADVHFEA 658
VGFIF QTV Q K +YTLS EVLQAAE HAES LKEWVTAVVKLEVNE+ GGADVHFEA
Sbjct: 211 VGFIFNQTVVQDKTEYTLSNAEVLQAAELHAESELKEWVTAVVKLEVNED-GGADVHFEA 269
Query: 657 FQMSDVCIRLFKEEWFDTDIKEDQDPKLSIMKKEVVVGVKDIKEVDNDFFLVVVKIFDHQ 478
FQMSD+CIRLFKEEWF+T+I D DPKLS MKKEVVVGVKD+KEVDNDFFLV+V+I DHQ
Sbjct: 270 FQMSDMCIRLFKEEWFETEIMPDDDPKLSKMKKEVVVGVKDLKEVDNDFFLVLVRILDHQ 329
Query: 477 GPLSTTFPIENRNTQVPMRALKNHLERTKNLPFVKRIADFHLLLVLARFLDLNADVPALT 298
GPLS+TFPIENR+++ MRALK HL+R K+LP VK+++DFHLLL +A+FLD+++DVPAL
Sbjct: 330 GPLSSTFPIENRSSRATMRALKTHLDRAKSLPLVKKMSDFHLLLFVAQFLDVSSDVPALA 389
Query: 297 ECIQTETTVPEGYQILIDSMAS 232
EC++ ++ VPEGY +LI+SMA+
Sbjct: 390 ECVRLQSPVPEGYALLIESMAN 411
>dbj|BAB39260.1| P0416G11.10 [Oryza sativa (japonica cultivar-group)]
Length = 415
Score = 262 bits (670), Expect = 4e-69
Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 3/206 (1%)
Frame = -1
Query: 837 VGFIFTQTVSQAKKD---YTLSXREVLQAAEYHAESGLKEWVTAVVKLEVNEETGGADVH 667
VG +FTQ V + D YT+S REVLQA E AE G+ EWVTA+VKLEV ++ G DVH
Sbjct: 211 VGLVFTQAVGRKTSDTGEYTMSNREVLQATELQAEGGIPEWVTAIVKLEVGDD-GSGDVH 269
Query: 666 FEAFQMSDVCIRLFKEEWFDTDIKEDQDPKLSIMKKEVVVGVKDIKEVDNDFFLVVVKIF 487
FEAFQMS++C++LFK+ +T+I + DP+LS M+KEVV G KD EVDNDFFLV VKI
Sbjct: 270 FEAFQMSEICVKLFKDGVLETEIGDKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKIS 329
Query: 486 DHQGPLSTTFPIENRNTQVPMRALKNHLERTKNLPFVKRIADFHLLLVLARFLDLNADVP 307
DHQGPLST FPIENR V M ALK+HL+R K+LPFVKRI+DFHLLL++A FLD+ ADVP
Sbjct: 330 DHQGPLSTGFPIENRGNPVAMSALKSHLDRAKHLPFVKRISDFHLLLLVAAFLDIKADVP 389
Query: 306 ALTECIQTETTVPEGYQILIDSMASA 229
ALT C++ ++ VPEGYQ+LI+S+A A
Sbjct: 390 ALTACVKNQSVVPEGYQLLIESLAGA 415
>dbj|BAB63634.1| P0483G10.28 [Oryza sativa (japonica cultivar-group)]
Length = 365
Score = 65.5 bits (158), Expect = 1e-09
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = -1
Query: 636 IRLFKEEWFDTDIKEDQDPKLSIMKKEVVVGVKDIKEVDNDFFLVVVKIFDHQ 478
++LFK+ T I++ DP+LS M+KEVV G KD EVDNDFFLV VKI DHQ
Sbjct: 269 LQLFKDGVLQTKIRDKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQ 321
>ref|XP_203522.1| similar to NPL4 [Rattus norvegicus] [Mus musculus]
Length = 520
Score = 49.7 bits (117), Expect = 5e-05
Identities = 61/237 (25%), Positives = 97/237 (40%), Gaps = 52/237 (21%)
Frame = -1
Query: 837 VGFIFTQTVSQA-----------KKDYTLSXREVLQAAEYHAESGL-----------KEW 724
VG+IFT VS+ K Y LS E + A ++ + ++
Sbjct: 220 VGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNICRLSPDGHFGSKF 279
Query: 723 VTAVVKLEVNEETGGAD--VHFEAFQMSDVCIRLFKEEWFDTDIKEDQDPKLSIMKKEVV 550
VTAV TGG D VHFE +Q+S+ C+ L ++E + P+L K+
Sbjct: 280 VTAVA-------TGGPDNQVHFEGYQVSNQCMALVRDECL---LPCKDAPELGYAKESSS 329
Query: 549 ------VGVKDIKEVDND-----------FFLVVVKIFDHQGPLST------TFPIENRN 439
V KDI + N+ + ++ + + P+ T FPIENR+
Sbjct: 330 EQYVPDVFYKDIDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRD 389
Query: 438 T---QVPMRALKNHLERTKNLPFVKRIADFHLLLVLA--RFLDLNADVPALTECIQT 283
+L +L + + F+ I+DFHLLL L + L + L E ++T
Sbjct: 390 VLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRT 446
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 732,971,275
Number of Sequences: 1393205
Number of extensions: 17190903
Number of successful extensions: 54565
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 47620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53194
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
