Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001815A_C02 KMC001815A_c02
(1678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-3 tubulin) gi|... 773 0.0
sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6 tubulin) gi|... 773 0.0
ref|NP_197478.1| tubulin alpha-5 chain-like protein; protein id:... 774 0.0
sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5 tubulin) gi|... 771 0.0
sp|P28752|TBA1_ORYSA Tubulin alpha-1 chain gi|100716|pir||S20758... 771 0.0
>sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-3 tubulin) gi|2511535|gb|AAC05719.1|
alpha-tubulin 3 [Eleusine indica]
Length = 450
Score = 773 bits (1996), Expect(2) = 0.0
Identities = 381/392 (97%), Positives = 387/392 (98%)
Frame = -3
Query: 1595 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 1416
MREIISIHIGQAGIQVGN+CWELYCLEHGI+PDG MPSD+S GV AHDAFNTFFSETGSG
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGV-AHDAFNTFFSETGSG 59
Query: 1415 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 1236
KHVPRA+FVDLEPTVIDEVR G+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL
Sbjct: 60 KHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 1235 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 1056
DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 1055 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 876
AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 239
Query: 875 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 696
TSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEPS
Sbjct: 240 TSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPS 299
Query: 695 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 516
SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 515 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 420
PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI
Sbjct: 360 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 103 bits (256), Expect(2) = 0.0
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 421 LHHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 272
+ HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA
Sbjct: 391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 440
>sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6 tubulin) gi|322880|pir||S28983 tubulin
alpha-6 chain - maize gi|22158|emb|CAA44863.1|
alpha-tubulin #6 [Zea mays]
Length = 450
Score = 773 bits (1996), Expect(2) = 0.0
Identities = 381/392 (97%), Positives = 387/392 (98%)
Frame = -3
Query: 1595 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 1416
MREIISIHIGQAGIQVGN+CWELYCLEHGI+PDG MPSD+S GV AHDAFNTFFSETGSG
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGV-AHDAFNTFFSETGSG 59
Query: 1415 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 1236
KHVPRA+FVDLEPTVIDEVR G+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL
Sbjct: 60 KHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 1235 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 1056
DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 1055 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 876
AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 239
Query: 875 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 696
TSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEPS
Sbjct: 240 TSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPS 299
Query: 695 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 516
SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 515 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 420
PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI
Sbjct: 360 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 103 bits (256), Expect(2) = 0.0
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 421 LHHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 272
+ HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA
Sbjct: 391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 440
>ref|NP_197478.1| tubulin alpha-5 chain-like protein; protein id: At5g19770.1,
supported by cDNA: gi_13605804, supported by cDNA:
gi_17473825 [Arabidopsis thaliana]
gi|15241179|ref|NP_197479.1| tubulin alpha-5 chain;
protein id: At5g19780.1, supported by cDNA: gi_14532775,
supported by cDNA: gi_19310732 [Arabidopsis thaliana]
gi|135406|sp|P20363|TBA3_ARATH Tubulin alpha-3/alpha-5
chain gi|99768|pir||A32712 tubulin alpha-5 chain -
Arabidopsis thaliana gi|166912|gb|AAA32888.1|
alpha-tubulin gi|166918|gb|AAA32891.1| alpha-5 tubulin
gi|13605805|gb|AAK32888.1|AF367301_1 AT5g19770/T29J13_190
[Arabidopsis thaliana] gi|14532776|gb|AAK64169.1|
putative tubulin alpha-5 chain [Arabidopsis thaliana]
gi|17473826|gb|AAL38340.1| unknown protein [Arabidopsis
thaliana] gi|19310733|gb|AAL85097.1| putative tubulin
alpha-5 chain [Arabidopsis thaliana]
gi|23397154|gb|AAN31860.1| putative tubulin alpha-5 chain
[Arabidopsis thaliana] gi|23397156|gb|AAN31861.1|
putative tubulin alpha-5 chain [Arabidopsis thaliana]
gi|23505949|gb|AAN28834.1| At5g19770/T29J13_190
[Arabidopsis thaliana] gi|24899739|gb|AAN65084.1| unknown
protein [Arabidopsis thaliana]
Length = 450
Score = 774 bits (1999), Expect(3) = 0.0
Identities = 382/392 (97%), Positives = 388/392 (98%)
Frame = -3
Query: 1595 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 1416
MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDG+MPSD++ GV AHDAFNTFFSETG+G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGV-AHDAFNTFFSETGAG 59
Query: 1415 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 1236
KHVPRAVFVDLEPTVIDEVR GTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 1235 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 1056
DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 1055 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 876
AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 239
Query: 875 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 696
TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEP+
Sbjct: 240 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPA 299
Query: 695 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 516
SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQP
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 515 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 420
P+VVPGGDLAKVQRAVCMISNNTAVAEVFSRI
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 101 bits (252), Expect(3) = 0.0
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = -1
Query: 421 LHHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEG 275
+ HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEG
Sbjct: 391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEG 439
Score = 21.6 bits (44), Expect(3) = 0.0
Identities = 7/9 (77%), Positives = 9/9 (99%)
Frame = -2
Query: 270 DDEEEGEDY 244
D+E+EGEDY
Sbjct: 442 DEEDEGEDY 450
>sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5 tubulin) gi|322879|pir||S28982 tubulin
alpha-5 chain - maize gi|22156|emb|CAA44862.1|
alpha-tubulin #5 [Zea mays] gi|450293|gb|AAA33437.1|
alpha-tubulin gi|452474|gb|AAA16225.1| alpha-tubulin
gi|18157220|emb|CAD20822.1| alpha tubulin [Zea mays]
Length = 450
Score = 771 bits (1990), Expect(2) = 0.0
Identities = 381/392 (97%), Positives = 386/392 (98%)
Frame = -3
Query: 1595 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 1416
MREIISIHIGQAGIQVGN+CWELYCLEHGI+ DG MPSDSS GV AHDAFNTFFSETGSG
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGV-AHDAFNTFFSETGSG 59
Query: 1415 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 1236
KHVPRA+FVDLEPTVIDEVR G+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL
Sbjct: 60 KHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 1235 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 1056
DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 1055 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 876
AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 239
Query: 875 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 696
TSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEPS
Sbjct: 240 TSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPS 299
Query: 695 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 516
SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 515 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 420
PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI
Sbjct: 360 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 103 bits (256), Expect(2) = 0.0
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 421 LHHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 272
+ HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA
Sbjct: 391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 440
>sp|P28752|TBA1_ORYSA Tubulin alpha-1 chain gi|100716|pir||S20758 tubulin alpha-1 chain -
rice gi|20379|emb|CAA77988.1| alpha 1 tubulin [Oryza
sativa] gi|1136124|emb|CAA62918.1| alfa-tubulin [Oryza
sativa (japonica cultivar-group)]
Length = 450
Score = 771 bits (1990), Expect(2) = 0.0
Identities = 379/392 (96%), Positives = 387/392 (98%)
Frame = -3
Query: 1595 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 1416
MREIISIHIGQAGIQVGN+CWELYCLEHGI+PDG MPSD++ GV AHDAFNTFFSETG+G
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGV-AHDAFNTFFSETGAG 59
Query: 1415 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 1236
KHVPRA+FVDLEPTVIDEVR G+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL
Sbjct: 60 KHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 1235 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 1056
DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 1055 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 876
AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 239
Query: 875 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 696
TSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEPS
Sbjct: 240 TSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPS 299
Query: 695 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 516
SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 515 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 420
PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI
Sbjct: 360 PSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 103 bits (256), Expect(2) = 0.0
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 421 LHHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 272
+ HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA
Sbjct: 391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGA 440
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,454,621,989
Number of Sequences: 1393205
Number of extensions: 35973331
Number of successful extensions: 254227
Number of sequences better than 10.0: 5511
Number of HSP's better than 10.0 without gapping: 143425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217038
length of database: 448,689,247
effective HSP length: 129
effective length of database: 268,965,802
effective search space used: 115386329058
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
