Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001813A_C01 KMC001813A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51820 F-actin capping protein alpha chain [imported] - Ara... 131 3e-43
ref|NP_187203.1| alpha subunit of F-actin capping protein; prote... 131 3e-43
dbj|BAC20863.1| putative alpha subunit of F-actin capping protei... 127 2e-41
ref|NP_611539.1| CG10540-PA [Drosophila melanogaster] gi|1113187... 72 1e-14
gb|EAA10831.1| agCP5596 [Anopheles gambiae str. PEST] 60 1e-11
>pir||T51820 F-actin capping protein alpha chain [imported] - Arabidopsis
thaliana gi|3702368|emb|CAA05054.1| alpha subunit of
F-actin capping protein [Arabidopsis thaliana]
Length = 308
Score = 131 bits (330), Expect(2) = 3e-43
Identities = 55/87 (63%), Positives = 76/87 (87%)
Frame = -3
Query: 604 WCSTWNIEFKGDNQTVELKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCAVGISS 425
W S WNI+F+ ++Q +++KGK+QVGAHYFEEGNV+LDAK + +D+T+FQ+ +DCA+ I++
Sbjct: 188 WRSVWNIDFQDESQVLDIKGKLQVGAHYFEEGNVELDAKKDFQDSTIFQSADDCAIAIAN 247
Query: 424 IIRHHETEYLASIEASYLSLPDSTFKD 344
IIRHHETEYLAS+E +Y LPD+TFKD
Sbjct: 248 IIRHHETEYLASLEVAYSKLPDNTFKD 274
Score = 65.9 bits (159), Expect(2) = 3e-43
Identities = 29/34 (85%), Positives = 32/34 (93%)
Frame = -1
Query: 342 LRRKLPVTRTLFPWHNTLQFSLTRDISKELGIGK 241
LRRKLPVTRTLFPW NTLQFSLTR++ KELG+GK
Sbjct: 275 LRRKLPVTRTLFPWQNTLQFSLTREVEKELGLGK 308
>ref|NP_187203.1| alpha subunit of F-actin capping protein; protein id: At3g05520.1,
supported by cDNA: 33531. [Arabidopsis thaliana]
gi|20141194|sp|O82631|CAPA_ARATH F-actin capping protein
alpha subunit (CapZ-alpha) gi|7596760|gb|AAF64531.1|
alpha subunit of F-actin capping protein [Arabidopsis
thaliana] gi|26451232|dbj|BAC42718.1| putative alpha
subunit of F-actin capping protein [Arabidopsis
thaliana]
Length = 308
Score = 131 bits (330), Expect(2) = 3e-43
Identities = 55/87 (63%), Positives = 76/87 (87%)
Frame = -3
Query: 604 WCSTWNIEFKGDNQTVELKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCAVGISS 425
W S WNI+F+ ++Q +++KGK+QVGAHYFEEGNV+LDAK + +D+T+FQ+ +DCA+ I++
Sbjct: 188 WRSVWNIDFQDESQVLDIKGKLQVGAHYFEEGNVELDAKKDFQDSTIFQSADDCAIAIAN 247
Query: 424 IIRHHETEYLASIEASYLSLPDSTFKD 344
IIRHHETEYLAS+E +Y LPD+TFKD
Sbjct: 248 IIRHHETEYLASLEVAYSKLPDNTFKD 274
Score = 65.9 bits (159), Expect(2) = 3e-43
Identities = 29/34 (85%), Positives = 32/34 (93%)
Frame = -1
Query: 342 LRRKLPVTRTLFPWHNTLQFSLTRDISKELGIGK 241
LRRKLPVTRTLFPW NTLQFSLTR++ KELG+GK
Sbjct: 275 LRRKLPVTRTLFPWQNTLQFSLTREVEKELGLGK 308
>dbj|BAC20863.1| putative alpha subunit of F-actin capping protein [Oryza sativa
(japonica cultivar-group)]
Length = 297
Score = 127 bits (318), Expect(2) = 2e-41
Identities = 56/87 (64%), Positives = 72/87 (82%)
Frame = -3
Query: 604 WCSTWNIEFKGDNQTVELKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCAVGISS 425
W S W +EF Q VE+KGK+QVGAHYFEEGNVQLD +CKD+T+ Q+PE+CAV I++
Sbjct: 177 WRSIWTLEFIDGLQLVEIKGKIQVGAHYFEEGNVQLDTNIDCKDSTILQSPEECAVSITN 236
Query: 424 IIRHHETEYLASIEASYLSLPDSTFKD 344
IIRHHE+EYL+S+E SY++L D+TFKD
Sbjct: 237 IIRHHESEYLSSLEESYMNLSDATFKD 263
Score = 64.3 bits (155), Expect(2) = 2e-41
Identities = 29/34 (85%), Positives = 31/34 (90%)
Frame = -1
Query: 342 LRRKLPVTRTLFPWHNTLQFSLTRDISKELGIGK 241
LRRKLPVTRTLFPWHNTL SLTRD++KEL IGK
Sbjct: 264 LRRKLPVTRTLFPWHNTLALSLTRDLTKELAIGK 297
>ref|NP_611539.1| CG10540-PA [Drosophila melanogaster]
gi|11131875|sp|Q9W2N0|CAPA_DROME F-actin capping protein
alpha subunit gi|7291228|gb|AAF46660.1| CG10540-PA
[Drosophila melanogaster] gi|17861504|gb|AAL39229.1|
GH10050p [Drosophila melanogaster]
Length = 286
Score = 71.6 bits (174), Expect(2) = 1e-14
Identities = 31/86 (36%), Positives = 52/86 (60%)
Frame = -3
Query: 604 WCSTWNIEFKGDNQTVELKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCAVGISS 425
W S W++ F+ + T ELKG ++V HY+E+GNVQL + EC+++ + + A +
Sbjct: 171 WRSQWHVTFQAGSGTAELKGVLKVQVHYYEDGNVQLVSSKECRESVVVSNEQQVAKEVIR 230
Query: 424 IIRHHETEYLASIEASYLSLPDSTFK 347
+I E EY +I +Y ++ D+TFK
Sbjct: 231 LIEDAENEYQLAISENYQTMSDTTFK 256
Score = 29.3 bits (64), Expect(2) = 1e-14
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 348 RILRRKLPVTRTLFPWHNTLQFSLTRDISKE 256
+ +RR+LP+TRT W + +S+ +++ +
Sbjct: 256 KAMRRQLPITRTKIDWSKIVSYSIGKELKTQ 286
>gb|EAA10831.1| agCP5596 [Anopheles gambiae str. PEST]
Length = 317
Score = 60.5 bits (145), Expect(2) = 1e-11
Identities = 30/87 (34%), Positives = 47/87 (53%), Gaps = 1/87 (1%)
Frame = -3
Query: 604 WCSTWNIEFKGDNQ-TVELKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCAVGIS 428
W S W I F T ELKG +++ HY+E+GNVQL + +C++ + A I
Sbjct: 201 WRSVWAITFPATGGGTAELKGSLKLQVHYYEDGNVQLVSAKDCRETVPITNEANTAKEII 260
Query: 427 SIIRHHETEYLASIEASYLSLPDSTFK 347
+I E +Y +I +Y ++ D+TFK
Sbjct: 261 RLIEESEHDYQTAISENYQTMSDTTFK 287
Score = 30.4 bits (67), Expect(2) = 1e-11
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 348 RILRRKLPVTRTLFPWHNTLQFSLTRDISKE 256
+ LRR+LPVTRT W + +S+ +++ +
Sbjct: 287 KALRRQLPVTRTKIDWSKIVSYSIGKELKTQ 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,308,602
Number of Sequences: 1393205
Number of extensions: 11242471
Number of successful extensions: 25577
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 24712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25558
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
