Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001812A_C01 KMC001812A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_722576.1| G-protein coupled receptor 112 [Homo sapiens] g... 34 1.3
ref|NP_393704.1| conserved hypothetical protein [Thermoplasma ac... 33 2.2
ref|NP_009371.1| Function unknown now; Fun21p [Saccharomyces cer... 32 6.3
gb|EAA36981.1| GLP_514_15034_10964 [Giardia lamblia ATCC 50803] 31 8.3
>ref|NP_722576.1| G-protein coupled receptor 112 [Homo sapiens]
gi|24285980|gb|AAN46668.1| G-protein coupled receptor
GPR112 [Homo sapiens]
Length = 2799
Score = 33.9 bits (76), Expect = 1.3
Identities = 18/47 (38%), Positives = 24/47 (50%)
Frame = +3
Query: 90 ISREVQGILQPNTSRNKGKIKAKCSNSTVTTSMLHLLADKTHHPPPP 230
IS Q I NT+ + K K+ S ST TT M+ +A + PP P
Sbjct: 260 ISLPTQSISIDNTTNSMKKTKSPSSESTKTTKMVEAMATEIFQPPTP 306
>ref|NP_393704.1| conserved hypothetical protein [Thermoplasma acidophilum]
gi|10639369|emb|CAC11371.1| conserved hypothetical
protein [Thermoplasma acidophilum]
Length = 254
Score = 33.1 bits (74), Expect = 2.2
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -2
Query: 198 VGGALM*LL*SCYT*LLFFPCFYLY*VEVSLVLLLISSILCTSFQYILHSLLKKIR*MER 19
VGGAL+ L S L F YL + + +++LL+SSIL TS +L ++ I+
Sbjct: 115 VGGALLMFLVSYL--LTGFVVHYLMNIVLIVIVLLVSSILFTSLFLVLSVFIRTIQTYNT 172
Query: 18 LICFIF 1
+ FIF
Sbjct: 173 VTMFIF 178
>ref|NP_009371.1| Function unknown now; Fun21p [Saccharomyces cerevisiae]
gi|1723184|sp|P39732|YAD1_YEAST HYPOTHETICAL 86.6 KD
PROTEIN IN PYK1-SNC1 INTERGENIC REGION
gi|2131259|pir||S70294 FUN21 protein - yeast
(Saccharomyces cerevisiae) gi|1326060|gb|AAC05001.1|
Fun21p [Saccharomyces cerevisiae]
Length = 760
Score = 31.6 bits (70), Expect = 6.3
Identities = 34/131 (25%), Positives = 57/131 (42%), Gaps = 9/131 (6%)
Frame = +3
Query: 45 ISCVKYIEMKYKEYLISREVQGILQPNTSRNKG---KIKAKCSNSTVTTSMLHLLADKTH 215
+ C KYIE YK + + +++ L+ R+K ++K S S+ L A +
Sbjct: 404 MDCWKYIEKNYKTFDETNDLRENLKEKLERDKALYLEVKNAKSKLKKKPSITKLPASSSP 463
Query: 216 HPPP-----PKRKTIGMMLH*NLTRKKTDTSSSSSKSHHLRPQLLIFTNFLAK-QYQIQT 377
P P P R+ L TR + +S+SS+S + P F N A+ + + +
Sbjct: 464 SPSPTSSASPSRQA---SLESIRTRARAHLASNSSRSPSVSPVRTTFNNKNAETKKSVVS 520
Query: 378 FQTYTLIKGER 410
+ LI G R
Sbjct: 521 PEKRKLINGRR 531
>gb|EAA36981.1| GLP_514_15034_10964 [Giardia lamblia ATCC 50803]
Length = 1356
Score = 31.2 bits (69), Expect = 8.3
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 84 YLISREVQ---GILQPNTSRNKGKIKAKCSNSTVTTSMLHLLADKTHHPPPPKRKTIGMM 254
+LI+R + I N +K ++ A ++T+S+LH +H PPP K
Sbjct: 671 HLINRTILFDGSIAASNPVTSKRRMDASTVKDSLTSSLLH----SSHEPPPQSEKDTYQA 726
Query: 255 LH*NLTRKKTDTSSSSSKSH 314
H T T S + H
Sbjct: 727 SHNRTTLSTVSTHSQRERLH 746
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,797,853
Number of Sequences: 1393205
Number of extensions: 11627021
Number of successful extensions: 26365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26305
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
