Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001810A_C01 KMC001810A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563676.1| expressed protein; protein id: At1g03140.1, sup... 147 6e-35
gb|AAL83635.1|AC093017_19 putative potassium channel regulatory ... 120 6e-27
ref|NP_175861.1| potassium channel regulatory factor, putative; ... 114 7e-25
dbj|BAC29527.1| unnamed protein product [Mus musculus] 72 2e-12
ref|NP_003666.1| PRP18 pre-mRNA processing factor 18 homolog; pr... 72 2e-12
>ref|NP_563676.1| expressed protein; protein id: At1g03140.1, supported by cDNA:
gi_15293172 [Arabidopsis thaliana]
gi|25518006|pir||E86162 hypothetical protein F10O3.3 -
Arabidopsis thaliana gi|4587563|gb|AAD25794.1|AC006550_2
Similar to gb|U51990 pre-mRNA-splicing factor hPrp18
from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come
from this gene. [Arabidopsis thaliana]
gi|13430636|gb|AAK25940.1|AF360230_1 unknown protein
[Arabidopsis thaliana] gi|15293173|gb|AAK93697.1|
unknown protein [Arabidopsis thaliana]
Length = 420
Score = 147 bits (371), Expect = 6e-35
Identities = 76/89 (85%), Positives = 80/89 (89%), Gaps = 2/89 (2%)
Frame = -1
Query: 487 RSAREKIYTHSVAHIMNDETTRKYLPSVKRLMTFCQRRYPTLPSKAVEFNRLANGSDLQS 308
RSAREKIYT+SVAHIMNDETTRKYL SVKRLMTFCQRRYPT+PSKAVEFN LANGSDLQS
Sbjct: 332 RSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQS 391
Query: 307 LLAEERLKGGN--QTSEERLRIMPAPRES 227
LLAEER GGN Q SEERLR+MP+ ES
Sbjct: 392 LLAEERFFGGNREQVSEERLRLMPSQSES 420
>gb|AAL83635.1|AC093017_19 putative potassium channel regulatory factor [Oryza sativa
(japonica cultivar-group)]
Length = 501
Score = 120 bits (302), Expect = 6e-27
Identities = 63/83 (75%), Positives = 70/83 (83%)
Frame = -1
Query: 487 RSAREKIYTHSVAHIMNDETTRKYLPSVKRLMTFCQRRYPTLPSKAVEFNRLANGSDLQS 308
RSAREKIY +SVAHIMNDETTRKYL SVKRLMTFCQR+YPT PS++VEFN LANGSDLQS
Sbjct: 422 RSAREKIYANSVAHIMNDETTRKYLQSVKRLMTFCQRKYPTDPSRSVEFNSLANGSDLQS 481
Query: 307 LLAEERLKGGNQTSEERLRIMPA 239
LLAE+ K SEE LR++ A
Sbjct: 482 LLAEQNSK----NSEETLRLVAA 500
>ref|NP_175861.1| potassium channel regulatory factor, putative; protein id:
At1g54590.1 [Arabidopsis thaliana]
gi|25405750|pir||A96588 hypothetical protein T22H22.4
[imported] - Arabidopsis thaliana
gi|3776560|gb|AAC64877.1| Similar to gb|U51990 hPrp18
(splicing factor) gene from Homo sapiens. [Arabidopsis
thaliana]
Length = 256
Score = 114 bits (284), Expect = 7e-25
Identities = 63/89 (70%), Positives = 71/89 (78%), Gaps = 3/89 (3%)
Frame = -1
Query: 487 RSAREKIYTHS-VAHIMNDETTRKYLPSVKRLMTFCQRRYPTLPSKAVEFNRLANGSDLQ 311
RSAREKI T S VAHIMN+ETTRKYL SVKRLMTFCQRRY LPSK++EFN LANGS+L
Sbjct: 167 RSAREKISTSSSVAHIMNNETTRKYLQSVKRLMTFCQRRYSALPSKSIEFNSLANGSNLH 226
Query: 310 SLLAEERLKGGN--QTSEERLRIMPAPRE 230
SLLAEER + + SEERL +MP+ E
Sbjct: 227 SLLAEERFFAADRERVSEERLWLMPSLNE 255
>dbj|BAC29527.1| unnamed protein product [Mus musculus]
Length = 197
Score = 72.4 bits (176), Expect = 2e-12
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = -1
Query: 487 RSAREKIYTHSVAHIMNDETTRKYLPSVKRLMTFCQRRYPTLPSKAVEFNRL 332
R+ REKI++ VAH++NDET RKY+ +KRLMT CQ+ +PT PSK VE+N L
Sbjct: 146 RTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 197
>ref|NP_003666.1| PRP18 pre-mRNA processing factor 18 homolog; pre-mRNA splicing
factor similar to S. cerevisiae Prp18; pre-mRNA
processing factor 18 [Homo sapiens]
gi|1805249|gb|AAB41490.1| hPrp18
gi|12653993|gb|AAH00794.1|AAH00794 pre-mRNA processing
factor 18 [Homo sapiens]
Length = 342
Score = 72.4 bits (176), Expect = 2e-12
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = -1
Query: 487 RSAREKIYTHSVAHIMNDETTRKYLPSVKRLMTFCQRRYPTLPSKAVEFNRL 332
R+ REKI++ VAH++NDET RKY+ +KRLMT CQ+ +PT PSK VE+N L
Sbjct: 291 RTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,997,594
Number of Sequences: 1393205
Number of extensions: 9277406
Number of successful extensions: 19953
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 19499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19944
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
