>KMC001809A_C01 KMC001809A_c01
gaaacaaattCTCAAAATTAAAGAAAATTATTATTCACTGTTTCACATGATGGAAGAAGA
TCTGAGACCAGTAGACCACGATGAATTGATTTTATTCTCTGTGATATACAACAGGAGCAA
CAAGAATATAGAATGGAAGAAGAAGAAAGGGTGAGGAGGAACAACAATCACGTGTTGTTG
ACATGGAAGCGATTCTTGGCGGCTAAAAATCGGCGAGTTTCCTGTGGAGGCGAGGTTTTG
GTATTTGCTGCAAGGTTCTGATCGCTAAAACGTCGCTTCTTTTCGCTTCCATGTAATGCT
CGATGCCACCGCTAATCTCTGTCGCTGAATCTGTTAAATGAGGGTTGCGAGAGTGTTTGA
ATCCAGCAAAATTATCCAGGTCTGATGGAGAGGGAGTGTGAGAGCAGAGGAAGAGGATGA
GGAAACAGAGGACAGCGAGAACTGGAATGATGTGGATGAACTTGTGTGGCGGTGCGGGAA
GAGGCGAGGACAGACGGTGAGGCTTGGGAGGTCCGTCGGCGGTGATGACGGTGGCGTC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001809A_C01 KMC001809A_c01
         (538 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_565804.1| expressed protein; protein id: At2g35470.1, sup...    63  3e-09
gb|AAL67580.1|AC018929_2 hypothetical protein [Oryza sativa]           47  1e-04
gb|AAL39351.1| GH26090p [Drosophila melanogaster]                      35  0.57
ref|NP_611737.2| CG30190-PA [Drosophila melanogaster] gi|2162657...    35  0.57
emb|CAB37867.1| atrophin-1 [Hylobates lar]                             34  1.3

>ref|NP_565804.1| expressed protein; protein id: At2g35470.1, supported by cDNA:
           13821. [Arabidopsis thaliana] gi|25370787|pir||A84769
           hypothetical protein At2g35470 [imported] - Arabidopsis
           thaliana gi|3608141|gb|AAC36174.1| expressed protein
           [Arabidopsis thaliana]
          Length = 167

 Score = 62.8 bits (151), Expect = 3e-09
 Identities = 49/123 (39%), Positives = 63/123 (50%), Gaps = 23/123 (18%)
 Frame = -1

Query: 505 KPHRLSSPLPAP-------PHKFIHIIPVLAVLCFLILFLCSHTPSPSDLDNFAGFKHSR 347
           KP RLSS L +P         K +H IP+L ++CF+IL+L S+ PS SDL  F GF    
Sbjct: 54  KPRRLSS-LQSPFVTTNQKQEKLVHFIPILTLICFIILYLTSYAPSQSDLAQFNGFMRP- 111

Query: 346 NPHLTDS---ATEISGGIEHYMEAKRSDVLAIR------------TLQQIPKPRL-HRKL 215
           + HL  S     EISG I       R+D L+IR            T + +P+ R  HRK 
Sbjct: 112 SKHLESSDENGDEISGFI-------RADTLSIRSSVRNLQETESFTTKSLPRRRTSHRKT 164

Query: 214 ADF 206
           ADF
Sbjct: 165 ADF 167

>gb|AAL67580.1|AC018929_2 hypothetical protein [Oryza sativa]
          Length = 155

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = -1

Query: 475 APPHKFIHIIPVLAVLCFLILFLCSHTPSPSDL 377
           A P + IHIIPVL +LCFL+LFL SH P+ S L
Sbjct: 38  AAPDRSIHIIPVLTLLCFLVLFLLSHDPASSSL 70

>gb|AAL39351.1| GH26090p [Drosophila melanogaster]
          Length = 292

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -3

Query: 530 RHHRRRTSQASPSVLASSRTATQVHPHHSSSRCPLFPHPLPLLSHSLSIRP 378
           +H  R   +A PSV AS   + +   +H   R P  P PLP   HSLS +P
Sbjct: 192 KHSFRAQLEAEPSVSASPSPSLRPKANHGKGRAP--PPPLPPKKHSLSPQP 240

>ref|NP_611737.2| CG30190-PA [Drosophila melanogaster] gi|21626579|gb|AAF46929.2|
           CG30190-PA [Drosophila melanogaster]
          Length = 408

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -3

Query: 530 RHHRRRTSQASPSVLASSRTATQVHPHHSSSRCPLFPHPLPLLSHSLSIRP 378
           +H  R   +A PSV AS   + +   +H   R P  P PLP   HSLS +P
Sbjct: 308 KHSFRAQLEAEPSVSASPSPSLRPKANHGKGRAP--PPPLPPKKHSLSPQP 356

>emb|CAB37867.1| atrophin-1 [Hylobates lar]
          Length = 301

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 23/52 (44%), Positives = 28/52 (53%)
 Frame = -2

Query: 537 TPPSSPPTDLPSLTVCPRLFPHRHTSSSTSFQFSLSSVSSSSSSALTLPLHQ 382
           +P S PP    S    P  FP+  +SSS+S   + SS SSSSSSA   P  Q
Sbjct: 16  SPHSLPPASSSSAPAPPMRFPY--SSSSSSSAAASSSSSSSSSSASPYPASQ 65

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,341,183
Number of Sequences: 1393205
Number of extensions: 11398261
Number of successful extensions: 61748
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 45401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58499
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MWL053b11_f AV769488 1 371 2 GENf017a05 BP059063 11 377 3 MPDL080h06_f AV780679 65 545 4 SPD052g11_f BP048183 66 169

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