Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001805A_C01 KMC001805A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175096.1| hypothetical protein; protein id: At1g44750.1, ... 78 5e-14
ref|NP_567339.1| putative protein; protein id: At4g08700.1, supp... 70 2e-11
pir||C85087 hypothetical protein AT4g08700 [imported] - Arabidop... 70 2e-11
ref|NP_193556.1| putative protein; protein id: At4g18220.1 [Arab... 69 2e-11
ref|NP_198932.1| purine permease-like protein; protein id: At5g4... 69 2e-11
>ref|NP_175096.1| hypothetical protein; protein id: At1g44750.1, supported by cDNA:
gi_17065411 [Arabidopsis thaliana]
gi|25350216|pir||D96506 hypothetical protein T12C22.2
[imported] - Arabidopsis thaliana
gi|8655985|gb|AAF78258.1|AC020576_2 Contains similarity
to purine permease from Arabidopsis thaliana
gb|AF078531. EST gb|AI997301 comes from this gene
gi|17065412|gb|AAL32860.1| Unknown protein [Arabidopsis
thaliana] gi|28058999|gb|AAO29976.1| Unknown protein
[Arabidopsis thaliana]
Length = 379
Score = 78.2 bits (191), Expect = 5e-14
Identities = 38/64 (59%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = -2
Query: 508 CSVGVVGLIFLVSSLYSHVISTVSLPVTPIASVIVFHDKMNGVKIISMAFGYLGFC-FIY 332
CSVGVVGLIFLV+SL+S+VIST+SL VTP+A+++VF DKM+GVKI++M GF ++Y
Sbjct: 295 CSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVVFRDKMSGVKIMAMLIAIWGFASYVY 354
Query: 331 LSEL 320
+ +
Sbjct: 355 QNHI 358
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = -3
Query: 468 LSTPMLSVLSLCQ*LLLLLLLFFMIR*MG*R*FPWLLAIWGFASYIYQNYIDDLK 304
L + ++S LSL L L+ F + G + L+AIWGFASY+YQN+IDDLK
Sbjct: 309 LFSNVISTLSLAV-TPLAALVVFRDKMSGVKIMAMLIAIWGFASYVYQNHIDDLK 362
>ref|NP_567339.1| putative protein; protein id: At4g08700.1, supported by cDNA:
38901., supported by cDNA: gi_20465910 [Arabidopsis
thaliana] gi|18491201|gb|AAL69503.1| unknown protein
[Arabidopsis thaliana] gi|20465911|gb|AAM20108.1|
unknown protein [Arabidopsis thaliana]
gi|21593430|gb|AAM65397.1| purine permease-like protein
[Arabidopsis thaliana]
Length = 361
Score = 69.7 bits (169), Expect = 2e-11
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Frame = -2
Query: 505 SVGVVGLIFLVSSLYSHVISTVSLPVTPIASVIVFHDKMNGVKIISMAFGYLGFCFI--- 335
SVG V LIFLVSSL+S++I T+SL VTP+A++ VFHDK+ VK+++M ++GF F
Sbjct: 285 SVGAVALIFLVSSLFSNLIGTLSLIVTPLAAIAVFHDKLTEVKMVAMLIAFMGFGFYIYQ 344
Query: 334 -YLSEL 320
YL +L
Sbjct: 345 NYLDDL 350
Score = 34.7 bits (78), Expect = 0.66
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -3
Query: 363 LLAIWGFASYIYQNYIDDLK 304
L+A GF YIYQNY+DDLK
Sbjct: 332 LIAFMGFGFYIYQNYLDDLK 351
>pir||C85087 hypothetical protein AT4g08700 [imported] - Arabidopsis thaliana
gi|7267512|emb|CAB77995.1| putative protein [Arabidopsis
thaliana] gi|7321059|emb|CAB82106.1| putative protein
[Arabidopsis thaliana]
Length = 432
Score = 69.7 bits (169), Expect = 2e-11
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Frame = -2
Query: 505 SVGVVGLIFLVSSLYSHVISTVSLPVTPIASVIVFHDKMNGVKIISMAFGYLGFCFI--- 335
SVG V LIFLVSSL+S++I T+SL VTP+A++ VFHDK+ VK+++M ++GF F
Sbjct: 279 SVGAVALIFLVSSLFSNLIGTLSLIVTPLAAIAVFHDKLTEVKMVAMLIAFMGFGFYIYQ 338
Query: 334 -YLSEL 320
YL +L
Sbjct: 339 NYLDDL 344
Score = 34.7 bits (78), Expect = 0.66
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -3
Query: 363 LLAIWGFASYIYQNYIDDLK 304
L+A GF YIYQNY+DDLK
Sbjct: 326 LIAFMGFGFYIYQNYLDDLK 345
>ref|NP_193556.1| putative protein; protein id: At4g18220.1 [Arabidopsis thaliana]
gi|7487850|pir||T04924 hypothetical protein T9A21.70 -
Arabidopsis thaliana gi|2832696|emb|CAA16794.1| putative
protein [Arabidopsis thaliana]
gi|7268615|emb|CAB78824.1| putative protein [Arabidopsis
thaliana]
Length = 344
Score = 69.3 bits (168), Expect = 2e-11
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = -2
Query: 505 SVGVVGLIFLVSSLYSHVISTVSLPVTPIASVIVFHDKMNGVKIISMAFGYLGF 344
S+G GLIF +SSL+S+ IS + LPV PI +VI+FHDKMNG+K+ISM GF
Sbjct: 252 SIGCTGLIFELSSLFSNAISALGLPVVPILAVIIFHDKMNGLKVISMILAIWGF 305
Score = 36.6 bits (83), Expect = 0.17
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 420 LLLLLFFMIR*MG*R*FPWLLAIWGFASYIYQNYIDD 310
+L ++ F + G + +LAIWGF SY+YQ Y+D+
Sbjct: 280 ILAVIIFHDKMNGLKVISMILAIWGFVSYVYQQYLDE 316
>ref|NP_198932.1| purine permease-like protein; protein id: At5g41160.1 [Arabidopsis
thaliana] gi|9759162|dbj|BAB09718.1| purine
permease-like protein [Arabidopsis thaliana]
Length = 358
Score = 69.3 bits (168), Expect = 2e-11
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 4/65 (6%)
Frame = -2
Query: 502 VGVVGLIFLVSSLYSHVISTVSLPVTPIASVIVFHDKMNGVKIISMAFGYLGFCFI---- 335
VG V LIFLVSSL+S++IST+SL VTP+A++ VFHDK+ VK+++M + GF F
Sbjct: 283 VGAVSLIFLVSSLFSNLISTLSLIVTPLAAIAVFHDKLTEVKMVAMPIAFTGFTFYIYQN 342
Query: 334 YLSEL 320
YL +L
Sbjct: 343 YLDDL 347
Score = 32.7 bits (73), Expect = 2.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 360 LAIWGFASYIYQNYIDDLK 304
+A GF YIYQNY+DDLK
Sbjct: 330 IAFTGFTFYIYQNYLDDLK 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,683,495
Number of Sequences: 1393205
Number of extensions: 7519709
Number of successful extensions: 20178
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 15030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19597
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
