Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001804A_C01 KMC001804A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188538.1| hypothetical protein; protein id: At3g19080.1 [... 139 3e-32
dbj|BAB01706.1| gb|AAD43149.1~gene_id:K13E13.21~strong similarit... 137 1e-31
ref|NP_588345.1| hypothetical protein [Schizosaccharomyces pombe... 89 5e-17
ref|NP_566210.1| expressed protein; protein id: At3g03590.1, sup... 85 1e-15
gb|AAM65610.1| unknown [Arabidopsis thaliana] 85 1e-15
>ref|NP_188538.1| hypothetical protein; protein id: At3g19080.1 [Arabidopsis
thaliana]
Length = 462
Score = 139 bits (350), Expect = 3e-32
Identities = 69/108 (63%), Positives = 84/108 (76%)
Frame = -1
Query: 655 EREDDLDEPKTKEKRQKGEKGKSPSGFLAPLQLSDALVNFLGTGESELSRSDVIKRMWEY 476
E + D +EP K+K+QK E LAPL LSDALV FLG GE+ LSR+DV+KR+WEY
Sbjct: 362 ESDGDSEEPNEKDKKQKKE-------VLAPLPLSDALVKFLGDGENSLSRADVVKRLWEY 414
Query: 475 IKGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPHFIKAEQ 332
I NDLQDPSDKR+++CD+KLKELF+VDSF +V+KLLT HFIKAEQ
Sbjct: 415 INHNDLQDPSDKRRVICDEKLKELFEVDSFEDTSVSKLLTNHFIKAEQ 462
Score = 82.4 bits (202), Expect = 5e-15
Identities = 45/110 (40%), Positives = 65/110 (58%), Gaps = 8/110 (7%)
Frame = -1
Query: 655 EREDDLDEPKTKEKRQKGEKGKSPS--------GFLAPLQLSDALVNFLGTGESELSRSD 500
E E + E ++ KR++ + KS GF LS L F TG +EL+R++
Sbjct: 230 EEESEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAF--TGVTELARTE 287
Query: 499 VIKRMWEYIKGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPH 350
V+K +W+YIK N+LQDP+DKR I+CD+ + LF V+S N F + K LT H
Sbjct: 288 VVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKH 337
Score = 77.0 bits (188), Expect = 2e-13
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Frame = -1
Query: 646 DDLD---EPKTKEKRQKGEKGKSPSGFLAPL-QLSDALVNFLGTGESELSRSDVIKRMWE 479
+DLD +EK ++ K K G + + QLS L +G S+L R++V+K+MW
Sbjct: 89 EDLDGDGSGSEEEKEERPVKAKKRGGGITKVSQLSPQLEKVVGA--SQLGRTEVVKKMWA 146
Query: 478 YIKGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPHFIKAEQ*VACGN 314
YI+ DLQDP D+RKI+CD+ L LF V + N F + K LT H C N
Sbjct: 147 YIREKDLQDPKDRRKIVCDELLHSLFRVKTINMFQMNKALTKHIWPLGDGDGCAN 201
>dbj|BAB01706.1| gb|AAD43149.1~gene_id:K13E13.21~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 452
Score = 137 bits (346), Expect = 1e-31
Identities = 68/106 (64%), Positives = 83/106 (78%)
Frame = -1
Query: 649 EDDLDEPKTKEKRQKGEKGKSPSGFLAPLQLSDALVNFLGTGESELSRSDVIKRMWEYIK 470
+ D +EP K+K+QK E LAPL LSDALV FLG GE+ LSR+DV+KR+WEYI
Sbjct: 354 DTDSEEPNEKDKKQKKE-------VLAPLPLSDALVKFLGDGENSLSRADVVKRLWEYIN 406
Query: 469 GNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPHFIKAEQ 332
NDLQDPSDKR+++CD+KLKELF+VDSF +V+KLLT HFIKAEQ
Sbjct: 407 HNDLQDPSDKRRVICDEKLKELFEVDSFEDTSVSKLLTNHFIKAEQ 452
Score = 81.6 bits (200), Expect = 8e-15
Identities = 45/112 (40%), Positives = 65/112 (57%), Gaps = 10/112 (8%)
Frame = -1
Query: 655 EREDDLDEPKTKEKRQKGE----------KGKSPSGFLAPLQLSDALVNFLGTGESELSR 506
E E + E ++ KR++ + K K GF LS L F TG +EL+R
Sbjct: 216 EEESEEQEVRSLRKRKRKKNRPAKSVEKPKRKGGGGFAKVCSLSPELQAF--TGVTELAR 273
Query: 505 SDVIKRMWEYIKGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPH 350
++V+K +W+YIK N+LQDP+DKR I+CD+ + LF V+S N F + K LT H
Sbjct: 274 TEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKH 325
Score = 77.0 bits (188), Expect = 2e-13
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Frame = -1
Query: 646 DDLD---EPKTKEKRQKGEKGKSPSGFLAPL-QLSDALVNFLGTGESELSRSDVIKRMWE 479
+DLD +EK ++ K K G + + QLS L +G S+L R++V+K+MW
Sbjct: 75 EDLDGDGSGSEEEKEERPVKAKKRGGGITKVSQLSPQLEKVVGA--SQLGRTEVVKKMWA 132
Query: 478 YIKGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPHFIKAEQ*VACGN 314
YI+ DLQDP D+RKI+CD+ L LF V + N F + K LT H C N
Sbjct: 133 YIREKDLQDPKDRRKIVCDELLHSLFRVKTINMFQMNKALTKHIWPLGDGDGCAN 187
>ref|NP_588345.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491884|pir||T41263 hypothetical protein SPCC285.17 -
fission yeast (Schizosaccharomyces pombe)
gi|3581917|emb|CAA20856.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 233
Score = 89.0 bits (219), Expect = 5e-17
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 8/99 (8%)
Frame = -1
Query: 628 KTKEKRQKGEKG------KSPSG--FLAPLQLSDALVNFLGTGESELSRSDVIKRMWEYI 473
+T+++++ GE+G + P+ P++LS L FLG +LSR +K++WEYI
Sbjct: 92 RTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGL--EQLSRPQTVKKLWEYI 149
Query: 472 KGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLT 356
K +DLQDP+DKR ILCDDKLK +F+VD+ + FT+ K LT
Sbjct: 150 KAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLT 188
>ref|NP_566210.1| expressed protein; protein id: At3g03590.1, supported by cDNA:
40813. [Arabidopsis thaliana]
gi|6091763|gb|AAF03473.1|AC009327_12 hypothetical
protein [Arabidopsis thaliana]
gi|26450613|dbj|BAC42418.1| unknown protein [Arabidopsis
thaliana] gi|28372894|gb|AAO39929.1| At3g03590
[Arabidopsis thaliana]
Length = 143
Score = 84.7 bits (208), Expect = 1e-15
Identities = 47/106 (44%), Positives = 65/106 (60%), Gaps = 8/106 (7%)
Frame = -1
Query: 634 EPKTKEKRQKGEKGKSPS-------GFLAPLQLSDALVNFLGTGESELSRSDVIKRMWEY 476
+PK K K + K SP+ G +S L FLGTGE+ SR+D IK +W Y
Sbjct: 38 KPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGET--SRTDAIKGIWTY 95
Query: 475 IKGNDLQDPSDKRKILCDDKLKELFDVDSFNGF-TVTKLLTPHFIK 341
IK +DLQ+P+DKR+I CD+ LK +F+ GF ++KLL+PHF+K
Sbjct: 96 IKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141
>gb|AAM65610.1| unknown [Arabidopsis thaliana]
Length = 143
Score = 84.7 bits (208), Expect = 1e-15
Identities = 47/106 (44%), Positives = 65/106 (60%), Gaps = 8/106 (7%)
Frame = -1
Query: 634 EPKTKEKRQKGEKGKSPS-------GFLAPLQLSDALVNFLGTGESELSRSDVIKRMWEY 476
+PK K K + K SP+ G +S L FLGTGE+ SR+D IK +W Y
Sbjct: 38 KPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGET--SRTDAIKGIWTY 95
Query: 475 IKGNDLQDPSDKRKILCDDKLKELFDVDSFNGF-TVTKLLTPHFIK 341
IK +DLQ+P+DKR+I CD+ LK +F+ GF ++KLL+PHF+K
Sbjct: 96 IKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,823,903
Number of Sequences: 1393205
Number of extensions: 11429187
Number of successful extensions: 30846
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 29584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30800
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
