Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001802A_C01 KMC001802A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa (japonica... 115 5e-25
ref|NP_186790.1| putative RNase H; protein id: At3g01410.1 [Arab... 103 1e-21
gb|AAO64815.1| At5g51080 [Arabidopsis thaliana] 100 3e-20
ref|NP_199921.1| putative protein; protein id: At5g51080.1 [Arab... 94 1e-18
ref|NP_173819.1| unknown protein; protein id: At1g24090.1 [Arabi... 92 7e-18
>gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa (japonica cultivar-group)]
Length = 289
Score = 115 bits (288), Expect = 5e-25
Identities = 55/92 (59%), Positives = 70/92 (75%)
Frame = -2
Query: 632 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 453
YRGLILGL++AI+ G+K I V GDS LVC QV+G W+ KNQN+ LC E ++LK F+SF
Sbjct: 195 YRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSF 254
Query: 452 KINHIPREYNSEADVQANFGISLRAGQVEEVR 357
+INHI RE+N+EAD QAN I+L +G V E R
Sbjct: 255 EINHIRREWNAEADRQANIAITLSSGVVSEER 286
>ref|NP_186790.1| putative RNase H; protein id: At3g01410.1 [Arabidopsis thaliana]
gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H
[Arabidopsis thaliana]
Length = 290
Score = 103 bits (258), Expect = 1e-21
Identities = 50/91 (54%), Positives = 63/91 (68%)
Frame = -2
Query: 632 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 453
YR L+LGL+ A+ +G+K++ V GDSMLVC QVQG WK + +A LC +AKEL N F +F
Sbjct: 197 YRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTF 256
Query: 452 KINHIPREYNSEADVQANFGISLRAGQVEEV 360
I HI RE NSEAD QAN I L GQ + +
Sbjct: 257 DIKHIAREKNSEADKQANSAIFLADGQTQVI 287
>gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
Length = 322
Score = 99.8 bits (247), Expect = 3e-20
Identities = 48/89 (53%), Positives = 65/89 (72%)
Frame = -2
Query: 632 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 453
Y GLILGLKHAI++GY I+VK DS LVC Q++G WK+ ++ ++ L EAK+L +K LSF
Sbjct: 232 YHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSF 291
Query: 452 KINHIPREYNSEADVQANFGISLRAGQVE 366
+I+H+ R NS+AD QAN L G+VE
Sbjct: 292 EISHVLRSLNSDADEQANMAARLSEGEVE 320
>ref|NP_199921.1| putative protein; protein id: At5g51080.1 [Arabidopsis thaliana]
gi|8843844|dbj|BAA97370.1| contains similarity to RNase
H~gene_id:MWD22.2 [Arabidopsis thaliana]
Length = 316
Score = 94.0 bits (232), Expect = 1e-18
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = -2
Query: 632 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 453
Y GLILGLKHAI++GY I+VK DS LVC Q++G WK+ ++ ++ L EAK+L +K LSF
Sbjct: 232 YHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSF 291
Query: 452 KINHIPREYNSEADVQANFGISL 384
+I+H+ R NS+AD QAN L
Sbjct: 292 EISHVLRSLNSDADEQANMAARL 314
>ref|NP_173819.1| unknown protein; protein id: At1g24090.1 [Arabidopsis thaliana]
Length = 535
Score = 91.7 bits (226), Expect = 7e-18
Identities = 46/88 (52%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Frame = -2
Query: 632 YRGLILGLKHAIKEGYKHIQVKGDSMLVC---NQVQGLWKIKNQNIASLCSEAKELKNKF 462
Y LILGLK+AI++GYK+I+VKGDS LVC Q++G WK+ ++ +A L EAK L NK
Sbjct: 263 YHALILGLKYAIEKGYKNIKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKLLCNKC 322
Query: 461 LSFKINHIPREYNSEADVQANFGISLRA 378
+SF+I+H+ R N++AD QAN + L A
Sbjct: 323 VSFEISHVLRNLNADADEQANLAVRLPA 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,528,701
Number of Sequences: 1393205
Number of extensions: 9029299
Number of successful extensions: 17190
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 16813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17180
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
