Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001800A_C01 KMC001800A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL16282.1|AF428352_1 At1g18030/T10F20_3 [Arabidopsis thaliana] 34 1.1
pir||G86315 hypothetical protein T10F20.4 - Arabidopsis thaliana... 32 3.2
ref|NP_564045.1| protein phosphatase 2C (PP2C), putative; protei... 32 3.2
gb|EAA19395.1| hypothetical protein [Plasmodium yoelii yoelii] 32 4.2
gb|EAA21938.1| putative protein kinase [Plasmodium yoelii yoelii] 32 5.4
>gb|AAL16282.1|AF428352_1 At1g18030/T10F20_3 [Arabidopsis thaliana]
Length = 351
Score = 33.9 bits (76), Expect = 1.1
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 2/55 (3%)
Frame = -2
Query: 492 DNQSAADSSENSDEVRAVTKLPESEGAVEGNNTSSLIGSGEIQEDNQ--VTQEEK 334
+N+ AADS + D V V K +SE G + +G+ E++ED V++E+K
Sbjct: 15 NNKHAADSFSSEDLVSPVKKAKKSEEVSGGGEAVAAVGNREVEEDKPSFVSEEKK 69
>pir||G86315 hypothetical protein T10F20.4 - Arabidopsis thaliana
gi|9719738|gb|AAF97840.1|AC034107_23 Contains similarity
to protein phosphatase 2C from Rattus norvegicus
gb|AF095927 and contains a protein phosphatase 2C
PF|00481 domain. ESTs gb|N95912, gb|AI993625 come from
this gene. [Arabidopsis thaliana]
Length = 341
Score = 32.3 bits (72), Expect = 3.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 492 DNQSAADSSENSDEVRAVTKLPESEGAVEGNNTSSLIGSGEIQEDNQ--VTQEEK 334
+N+ AADS + D V V K +SE G + +G+ E +ED V++E+K
Sbjct: 5 NNKHAADSFSSEDLVSPVKKAKKSEEVSGGGEAVAAVGNREAEEDKPSFVSEEKK 59
>ref|NP_564045.1| protein phosphatase 2C (PP2C), putative; protein id: At1g18030.1,
supported by cDNA: gi_16226855 [Arabidopsis thaliana]
Length = 351
Score = 32.3 bits (72), Expect = 3.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 492 DNQSAADSSENSDEVRAVTKLPESEGAVEGNNTSSLIGSGEIQEDNQ--VTQEEK 334
+N+ AADS + D V V K +SE G + +G+ E +ED V++E+K
Sbjct: 15 NNKHAADSFSSEDLVSPVKKAKKSEEVSGGGEAVAAVGNREAEEDKPSFVSEEKK 69
>gb|EAA19395.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1201
Score = 32.0 bits (71), Expect = 4.2
Identities = 33/118 (27%), Positives = 54/118 (44%), Gaps = 6/118 (5%)
Frame = +2
Query: 5 ENTTFLKIDN*IPHSTIKYDKLNNIYSSI**THILLLLFTNRRGS--YFDIKYK*IYAAR 178
E+ T +KI N K DK+NN Y+ + +LL N+ +++IK K + +
Sbjct: 247 ESLTEIKIKN------KKLDKINNTYTYCCWVNDGILLLINKENYLIFYNIKKKLLKIYK 300
Query: 179 PH----NIKKIS*NLN*VLSSRQFQF*VQKTHYYETDGVKFTKNSGLNELVDVHIHFS 340
H I K++ LS+ + ++YE K N GLN L+ ++HFS
Sbjct: 301 DHIENSQILKVT-----CLSNGFILYDNNYIYFYEESNNK-VNNDGLNYLLKYYVHFS 352
>gb|EAA21938.1| putative protein kinase [Plasmodium yoelii yoelii]
Length = 2699
Score = 31.6 bits (70), Expect = 5.4
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 474 DSSENSDEVRAVTKLPESEGAVEGNNTSSLIGSGE-IQEDNQVTQEEK 334
D N++E + +TK+ E+EG + NN +S + ++ N+ ++EEK
Sbjct: 1043 DKDYNNEEYKYITKIFENEGYININNLASFYEKNDSTEQGNEKSKEEK 1090
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,055,106
Number of Sequences: 1393205
Number of extensions: 8202157
Number of successful extensions: 18852
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18836
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
