Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001798A_C01 KMC001798A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196946.1| putative protein; protein id: At5g14420.1, supp... 144 6e-34
ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabi... 114 1e-24
ref|NP_564907.1| F12A21.7; protein id: At1g67800.1, supported by... 112 4e-24
ref|NP_201202.2| putative protein; protein id: At5g63970.1, supp... 75 4e-13
dbj|BAB92575.1| P0497A05.19 [Oryza sativa (japonica cultivar-gro... 73 3e-12
>ref|NP_196946.1| putative protein; protein id: At5g14420.1, supported by cDNA:
gi_20466261 [Arabidopsis thaliana]
gi|11357547|pir||T48615 hypothetical protein F18O22.210
- Arabidopsis thaliana gi|7573467|emb|CAB87781.1|
putative protein [Arabidopsis thaliana]
gi|20466262|gb|AAM20448.1| putative protein [Arabidopsis
thaliana] gi|23198082|gb|AAN15568.1| putative protein
[Arabidopsis thaliana]
Length = 468
Score = 144 bits (364), Expect = 6e-34
Identities = 64/102 (62%), Positives = 80/102 (77%), Gaps = 3/102 (2%)
Frame = -1
Query: 558 DRIPLPPPLYGATASYNSPKTSRQSSFRPSAPSHR---HDIGTNPPASFASSASDNQVCP 388
+R PLPPP+ G ++SYNSPK SR SF+PS P H + + ++P SSASDNQ+CP
Sbjct: 367 ERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCP 426
Query: 387 ICLTDPKNMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY 262
ICL++PK+MAFGCGHQTCCECG DL++CPICR+ I TRIKLY
Sbjct: 427 ICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
>ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabidopsis thaliana]
gi|6016736|gb|AAF01562.1|AC009325_32 unknown protein
[Arabidopsis thaliana]
Length = 489
Score = 114 bits (284), Expect = 1e-24
Identities = 56/98 (57%), Positives = 69/98 (70%)
Frame = -1
Query: 555 RIPLPPPLYGATASYNSPKTSRQSSFRPSAPSHRHDIGTNPPASFASSASDNQVCPICLT 376
RIPLPPP+ S +S +SR +F PS P + + + SSA D Q+CPICL+
Sbjct: 402 RIPLPPPVQ----SGSSFSSSRIPNFEPSVPPYPFE------SKQMSSADDIQLCPICLS 451
Query: 375 DPKNMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY 262
+PKNMAFGCGHQTCCECG DL++CPICR+ I TRIKLY
Sbjct: 452 NPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
>ref|NP_564907.1| F12A21.7; protein id: At1g67800.1, supported by cDNA: 34552.
[Arabidopsis thaliana] gi|21592955|gb|AAM64905.1|
unknown [Arabidopsis thaliana]
Length = 433
Score = 112 bits (279), Expect = 4e-24
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = -1
Query: 558 DRIPLPPPLYGATASYNSPKTSRQSSFRPSAPSHRHDIGTNPPASFASSASDNQVCPICL 379
DRI LPPP Y + NSP+TSR +SF+ + + + + PP++ + S Q CP+CL
Sbjct: 338 DRIALPPPTYATQSMRNSPRTSRSTSFQNKP--YDNGVSSTPPST-THNESQQQFCPVCL 394
Query: 378 TDPKNMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY 262
KNMAF CGHQTC CG+DL +CPICRS+I RIKLY
Sbjct: 395 VSAKNMAFNCGHQTCAGCGEDLHVCPICRSSISVRIKLY 433
>ref|NP_201202.2| putative protein; protein id: At5g63970.1, supported by cDNA:
gi_20259325 [Arabidopsis thaliana]
gi|20259326|gb|AAM13989.1| unknown protein [Arabidopsis
thaliana] gi|21689819|gb|AAM67553.1| unknown protein
[Arabidopsis thaliana]
Length = 367
Score = 75.5 bits (184), Expect = 4e-13
Identities = 40/96 (41%), Positives = 51/96 (52%)
Frame = -1
Query: 549 PLPPPLYGATASYNSPKTSRQSSFRPSAPSHRHDIGTNPPASFASSASDNQVCPICLTDP 370
PLPPP P+ + + S P+ + S + S VCPICLT+P
Sbjct: 284 PLPPP----------PEVIERDNAVRSVPNQMTETAEK---SDRLAPSTVPVCPICLTNP 330
Query: 369 KNMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY 262
K+MAF CGH TC ECG + CP+CR I TRI+LY
Sbjct: 331 KDMAFSCGHTTCKECGVVITTCPLCRQPITTRIRLY 366
>dbj|BAB92575.1| P0497A05.19 [Oryza sativa (japonica cultivar-group)]
gi|20804929|dbj|BAB92608.1| P0456E05.7 [Oryza sativa
(japonica cultivar-group)]
Length = 495
Score = 72.8 bits (177), Expect = 3e-12
Identities = 42/88 (47%), Positives = 53/88 (59%), Gaps = 7/88 (7%)
Frame = -1
Query: 567 KAIDRIPLPPP-------LYGATASYNSPKTSRQSSFRPSAPSHRHDIGTNPPASFASSA 409
K+ +R+PLPPP YG+ S++ P T QSS S+ H ++ PA SS
Sbjct: 369 KSPERVPLPPPGGSHDAYSYGSK-SFSKPSTYPQSSTSSSSYPHYETAQSSSPA-VPSST 426
Query: 408 SDNQVCPICLTDPKNMAFGCGHQTCCEC 325
DNQVCPICL +PK+MAFGCGHQ C C
Sbjct: 427 YDNQVCPICLVNPKDMAFGCGHQ-CNPC 453
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,032,380
Number of Sequences: 1393205
Number of extensions: 11416168
Number of successful extensions: 51137
Number of sequences better than 10.0: 421
Number of HSP's better than 10.0 without gapping: 45963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50789
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
