Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001796A_C01 KMC001796A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178182.1| mRNA export protein, putative; protein id: At1g... 124 6e-28
dbj|BAB90741.1| putative mRNA export protein [Oryza sativa (japo... 100 2e-20
ref|NP_596784.1| poly(a)+ rna export protein. [Schizosaccharomyc... 52 4e-06
gb|EAA31842.1| hypothetical protein [Neurospora crassa] 50 1e-05
emb|CAC18615.1| probable nuclear pore complex protein sonA [Neur... 50 1e-05
>ref|NP_178182.1| mRNA export protein, putative; protein id: At1g80670.1, supported
by cDNA: 37635. [Arabidopsis thaliana]
gi|25387426|pir||A96839 F23A5.2(form2) [imported] -
Arabidopsis thaliana gi|6503279|gb|AAF14655.1|AC011713_3
F23A5.2(form2) [Arabidopsis thaliana]
gi|21593271|gb|AAM65220.1| mRNA export protein, putative
[Arabidopsis thaliana]
Length = 349
Score = 124 bits (311), Expect = 6e-28
Identities = 54/63 (85%), Positives = 58/63 (91%)
Frame = -3
Query: 514 CNQPIPCSAFNSDGSIYAYAVCYDWSKGAENHNPTTAKSNIFLHLPQETEVKGKPKAGAT 335
CNQPIPCS+FN DGSIYAYA CYDWSKGAENHNP TAKS+IFLHLPQE+EVK KP+ GAT
Sbjct: 287 CNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPRVGAT 346
Query: 334 GRK 326
GRK
Sbjct: 347 GRK 349
>dbj|BAB90741.1| putative mRNA export protein [Oryza sativa (japonica
cultivar-group)]
Length = 344
Score = 99.8 bits (247), Expect = 2e-20
Identities = 43/56 (76%), Positives = 48/56 (84%)
Frame = -3
Query: 514 CNQPIPCSAFNSDGSIYAYAVCYDWSKGAENHNPTTAKSNIFLHLPQETEVKGKPK 347
C PI CS FN DGSI+AYAVCYDWSKGAE HNP+TAK+NIFLH QE+EVKGKP+
Sbjct: 285 CPSPITCSTFNQDGSIFAYAVCYDWSKGAEKHNPSTAKTNIFLHSVQESEVKGKPR 340
>ref|NP_596784.1| poly(a)+ rna export protein. [Schizosaccharomyces pombe]
gi|1172829|sp|P41838|RAE1_SCHPO Poly(A)+ RNA export
protein gi|1362233|pir||A56119 RNA export protein rae1 -
fission yeast (Schizosaccharomyces pombe)
gi|625094|gb|AAA86311.1| polyA+ RNA export
gi|2842504|emb|CAA16856.1| poly(a)+ rna export protein.
[Schizosaccharomyces pombe]
Length = 352
Score = 52.0 bits (123), Expect = 4e-06
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = -3
Query: 502 IPCSAFNSDGSIYAYAVCYDWSKGAENHNPTTAKSNIFLHLPQETEVKGKPKAG 341
I CS FN G I+AYA+ YDWSKG N + I LH + E+K +PK G
Sbjct: 299 ISCSTFNRTGDIFAYAISYDWSKG-YTFNNAQLPNKIMLHPVPQDEIKPRPKKG 351
>gb|EAA31842.1| hypothetical protein [Neurospora crassa]
Length = 357
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -3
Query: 502 IPCSAFNSDGSIYAYAVCYDWSKGAENHNPTTAKSNIFLHLPQETEVKGKP 350
I + FN GSI+AYA+ YDWSKG + ++P T + + LH Q+ E K +P
Sbjct: 303 ITSTTFNKTGSIFAYAISYDWSKGYQGNSP-TYPTKVMLHPVQQDECKPRP 352
>emb|CAC18615.1| probable nuclear pore complex protein sonA [Neurospora crassa]
Length = 349
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -3
Query: 502 IPCSAFNSDGSIYAYAVCYDWSKGAENHNPTTAKSNIFLHLPQETEVKGKP 350
I + FN GSI+AYA+ YDWSKG + ++P T + + LH Q+ E K +P
Sbjct: 295 ITSTTFNKTGSIFAYAISYDWSKGYQGNSP-TYPTKVMLHPVQQDECKPRP 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,414,608
Number of Sequences: 1393205
Number of extensions: 9183100
Number of successful extensions: 19371
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 18776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19352
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
