Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001795A_C01 KMC001795A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB67931.1| P0506E04.8 [Oryza sativa (japonica cultivar-grou... 46 2e-04
ref|NP_564601.1| expressed protein; protein id: At1g52140.1, sup... 35 0.49
gb|AAM63626.1| unknown [Arabidopsis thaliana] 35 0.49
ref|NP_192125.1| hypothetical protein; protein id: At4g02160.1 [... 34 0.64
gb|AAL49427.1|AF316500_14 unknown [Leptospira interrogans] 34 0.64
>dbj|BAB67931.1| P0506E04.8 [Oryza sativa (japonica cultivar-group)]
gi|20161851|dbj|BAB90765.1| OSJNBa0052O12.23 [Oryza
sativa (japonica cultivar-group)]
Length = 232
Score = 45.8 bits (107), Expect = 2e-04
Identities = 26/47 (55%), Positives = 33/47 (69%), Gaps = 8/47 (17%)
Frame = -1
Query: 462 VRVSNYSALEENE------EVGSG--LVDDQAEDFIRRFYEQLKTQS 346
VRVSNYS+ EE + + G G VDD+AE+FIRRFYEQL+ Q+
Sbjct: 173 VRVSNYSSEEEEDGDYGHADGGGGGEAVDDEAEEFIRRFYEQLRRQN 219
>ref|NP_564601.1| expressed protein; protein id: At1g52140.1, supported by cDNA:
25812. [Arabidopsis thaliana] gi|25405529|pir||D96561
hypothetical protein F5F19.20 [imported] - Arabidopsis
thaliana gi|4220461|gb|AAD12688.1| ESTs gb|T75642 and
gb|AA650997 come from this gene. [Arabidopsis thaliana]
gi|28393418|gb|AAO42131.1| unknown protein [Arabidopsis
thaliana] gi|28973121|gb|AAO63885.1| unknown protein
[Arabidopsis thaliana]
Length = 208
Score = 34.7 bits (78), Expect = 0.49
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -1
Query: 453 SNYSALEENEEVGSGLVDDQAEDFIRRFYEQLKTQSR 343
S + EN +V +G VD A+DFI++FY+ L Q +
Sbjct: 167 SPFPLTPENGDVANGHVDKAADDFIKKFYKNLNQQKK 203
>gb|AAM63626.1| unknown [Arabidopsis thaliana]
Length = 208
Score = 34.7 bits (78), Expect = 0.49
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -1
Query: 453 SNYSALEENEEVGSGLVDDQAEDFIRRFYEQLKTQSR 343
S + EN +V +G VD A+DFI++FY+ L Q +
Sbjct: 167 SPFPLTPENGDVANGHVDKAADDFIKKFYKNLNQQKK 203
>ref|NP_192125.1| hypothetical protein; protein id: At4g02160.1 [Arabidopsis
thaliana] gi|7486841|pir||T01517 hypothetical protein
T10M13.16.1 - Arabidopsis thaliana
gi|3912930|gb|AAC78714.1| hypothetical protein
[Arabidopsis thaliana] gi|7268600|emb|CAB80709.1|
hypothetical protein [Arabidopsis thaliana]
Length = 183
Score = 34.3 bits (77), Expect = 0.64
Identities = 13/29 (44%), Positives = 23/29 (78%)
Frame = -1
Query: 429 NEEVGSGLVDDQAEDFIRRFYEQLKTQSR 343
N++ G ++D +AE+FI RFYEQ++ Q++
Sbjct: 141 NDDGGDEMIDAKAEEFIVRFYEQMRMQNQ 169
>gb|AAL49427.1|AF316500_14 unknown [Leptospira interrogans]
Length = 363
Score = 34.3 bits (77), Expect = 0.64
Identities = 32/110 (29%), Positives = 55/110 (49%), Gaps = 5/110 (4%)
Frame = -1
Query: 444 SALEENEEVGSGLVDDQAEDFIRRFYEQLKTQSRGQLAGF*IVVTVAL-PLWNCRQVRID 268
S L+ E+ LV+D A+ Y+ KT + G+++GF T L L + V D
Sbjct: 141 SILKTKEKNNLFLVEDCAQSH-GALYKNKKTGTFGEMSGFSFYPTKNLGALGDAGAVVTD 199
Query: 267 ENCTSIPLRELQNLYSTIA----VVDRNLKVWQLLHHLIDVKTKHLMLMN 130
+ +R+L+N S+I +V N ++ +L ++ +K KHL +MN
Sbjct: 200 NDLYHDEIRKLRNYGSSIKYKNDLVGYNSRLDELQATILSIKLKHLDVMN 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,800,094
Number of Sequences: 1393205
Number of extensions: 7103482
Number of successful extensions: 15090
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15086
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
