Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001793A_C03 KMC001793A_c03
(732 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN86619.1| succinyl-CoA ligase alpha subunit [Lycopersicon e... 220 2e-56
ref|NP_197716.1| succinyl-CoA synthetase, alpha subunit; protein... 209 2e-53
ref|NP_196447.1| succinyl-CoA-ligase alpha subunit; protein id: ... 209 4e-53
gb|AAM65450.1| succinyl-CoA synthetase, alpha subunit [Arabidops... 207 9e-53
pir||S30579 succinate-CoA ligase (GDP-forming) (EC 6.2.1.4) alph... 207 2e-52
>gb|AAN86619.1| succinyl-CoA ligase alpha subunit [Lycopersicon esculentum]
Length = 332
Score = 220 bits (560), Expect = 2e-56
Identities = 108/117 (92%), Positives = 114/117 (97%)
Frame = -1
Query: 732 GGDPFNGTNFVDCLKKFLSDPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGL 553
GGDPFNGTNFVDCL+KF++DPQTEGIVLIGEIGGTAEEDAAALIKESGT+KP+VAFIAGL
Sbjct: 216 GGDPFNGTNFVDCLEKFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGL 275
Query: 552 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGTAMLEVFKQRGLV 382
TAPPGRRMGHAGAIVSGGKGTAQDKIK LKEAGVTV ESPAKIG +MLEVFKQRGLV
Sbjct: 276 TAPPGRRMGHAGAIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQRGLV 332
>ref|NP_197716.1| succinyl-CoA synthetase, alpha subunit; protein id: At5g23250.1,
supported by cDNA: 39462., supported by cDNA:
gi_20260189 [Arabidopsis thaliana]
gi|10177814|dbj|BAB11180.1| succinyl-CoA synthetase,
alpha subunit [Arabidopsis thaliana]
gi|20260190|gb|AAM12993.1| succinyl-CoA synthetase,
alpha subunit [Arabidopsis thaliana]
gi|21387045|gb|AAM47926.1| succinyl-CoA synthetase alpha
subunit [Arabidopsis thaliana]
Length = 341
Score = 209 bits (533), Expect = 2e-53
Identities = 101/118 (85%), Positives = 113/118 (95%)
Frame = -1
Query: 732 GGDPFNGTNFVDCLKKFLSDPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGL 553
GGDPFNGTNFVDCL+KF DPQTEGIVLIGEIGGTAEEDAAALIKE+GT+KP+VAFIAGL
Sbjct: 224 GGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGL 283
Query: 552 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGTAMLEVFKQRGLVQ 379
TAPPGRRMGHAGAIVSGGKGTAQDKIK+L++AGV VVESPAKIG AM E+F++RGL++
Sbjct: 284 TAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341
>ref|NP_196447.1| succinyl-CoA-ligase alpha subunit; protein id: At5g08300.1,
supported by cDNA: 10292., supported by cDNA:
gi_18252214 [Arabidopsis thaliana]
gi|19884199|sp|P53586|SUCA_ARATH Succinyl-CoA ligase
[GDP-forming] alpha-chain, mitochondrial precursor
(Succinyl-CoA synthetase, alpha chain) (SCS-alpha)
gi|11272000|pir||T51816 succinate-CoA ligase
(GDP-forming) (EC 6.2.1.4) alpha chain [imported] -
Arabidopsis thaliana gi|3660467|emb|CAA05023.1|
succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana]
gi|10178272|emb|CAC08330.1| succinyl-CoA-ligase alpha
subunit [Arabidopsis thaliana]
gi|18252215|gb|AAL61940.1| succinyl-CoA-ligase alpha
subunit [Arabidopsis thaliana]
gi|21387057|gb|AAM47932.1| succinyl-CoA-ligase alpha
subunit [Arabidopsis thaliana]
gi|21536557|gb|AAM60889.1| succinyl-CoA-ligase alpha
subunit [Arabidopsis thaliana]
Length = 347
Score = 209 bits (531), Expect = 4e-53
Identities = 102/118 (86%), Positives = 112/118 (94%)
Frame = -1
Query: 732 GGDPFNGTNFVDCLKKFLSDPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGL 553
GGDPFNGTNFVDCL+KF DPQTEGIVLIGEIGGTAEEDAAALIK SGTEKP+VAFIAGL
Sbjct: 229 GGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGL 288
Query: 552 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGTAMLEVFKQRGLVQ 379
TAPPGRRMGHAGAIVSGGKGTAQDKIK+L +AGV VVESPAKIG+AM E+F++RGL++
Sbjct: 289 TAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346
>gb|AAM65450.1| succinyl-CoA synthetase, alpha subunit [Arabidopsis thaliana]
Length = 341
Score = 207 bits (528), Expect = 9e-53
Identities = 100/118 (84%), Positives = 112/118 (94%)
Frame = -1
Query: 732 GGDPFNGTNFVDCLKKFLSDPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGL 553
GGDPFNGTNFVDCL+KF DPQTEGIVLIGEIGGTAEEDAAALIKE+GT+KP+VAFIAGL
Sbjct: 224 GGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGL 283
Query: 552 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGTAMLEVFKQRGLVQ 379
TAPPGRRMGHAGAIVSGGKGTAQDK K+L++AGV VVESPAKIG AM E+F++RGL++
Sbjct: 284 TAPPGRRMGHAGAIVSGGKGTAQDKTKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341
>pir||S30579 succinate-CoA ligase (GDP-forming) (EC 6.2.1.4) alpha chain -
Arabidopsis thaliana (fragment) gi|16510|emb|CAA48891.1|
succinate--CoA ligase (GDP-forming) [Arabidopsis
thaliana]
Length = 345
Score = 207 bits (526), Expect = 2e-52
Identities = 99/118 (83%), Positives = 112/118 (94%)
Frame = -1
Query: 732 GGDPFNGTNFVDCLKKFLSDPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGL 553
GGDPFNGTNFVDCL+KF DPQTEGIVLIGEIGGTAEEDAAALIKE+GT+KP+VAFIAGL
Sbjct: 228 GGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGL 287
Query: 552 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGTAMLEVFKQRGLVQ 379
TAPPGRRMGHAG IVSGGKGTAQDKIK+L++AGV VVESPAK+G AM E+F++RGL++
Sbjct: 288 TAPPGRRMGHAGRIVSGGKGTAQDKIKSLRDAGVKVVESPAKLGAAMFELFQERGLLK 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,931,139
Number of Sequences: 1393205
Number of extensions: 14452316
Number of successful extensions: 50943
Number of sequences better than 10.0: 239
Number of HSP's better than 10.0 without gapping: 49033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50712
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
