Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001782A_C03 KMC001782A_c03
(673 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC32132.1| ISP42-like protein [Picea mariana] 70 2e-21
ref|NP_188634.1| membrane import protein, putative; protein id: ... 69 1e-20
dbj|BAB03165.1| membrane import protein-like [Arabidopsis thaliana] 69 1e-20
dbj|BAA88180.1| unnamed protein product [Oryza sativa (japonica ... 62 2e-16
ref|NP_175457.1| hypothetical protein; protein id: At1g50400.1 [... 63 2e-12
>gb|AAC32132.1| ISP42-like protein [Picea mariana]
Length = 94
Score = 70.1 bits (170), Expect(3) = 2e-21
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = -2
Query: 672 VQKVSEKVSLASELMCNYLSRDVTASFGYDYILSQCRLRGKVDSH 538
VQKVSEKVSLAS+ M N++SRD TAS GYDY+L QCRLRG++D++
Sbjct: 9 VQKVSEKVSLASDFMYNHMSRDSTASVGYDYLLRQCRLRGRIDTN 53
Score = 43.1 bits (100), Expect(3) = 2e-21
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3
Query: 533 CVGALLEERLNMDLNFILSAELDHQAK 453
CV A LEERLNM +NF+LSAE+DH K
Sbjct: 55 CVAAYLEERLNMGVNFVLSAEIDHWKK 81
Score = 31.6 bits (70), Expect(3) = 2e-21
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -1
Query: 457 QKDYKFGFGLTVGE 416
+KDYKFGFG+TVGE
Sbjct: 80 KKDYKFGFGMTVGE 93
>ref|NP_188634.1| membrane import protein, putative; protein id: At3g20000.1,
supported by cDNA: gi_15292982 [Arabidopsis thaliana]
gi|13632086|sp|Q9LHE5|OM40_ARATH Probable mitochondrial
import receptor subunit TOM40 homolog (Translocase of
outer membrane 40 kDa subunit homolog)
gi|15292983|gb|AAK93602.1| putative membrane import
protein [Arabidopsis thaliana]
gi|21436305|gb|AAM51291.1| putative membrane import
protein [Arabidopsis thaliana]
Length = 309
Score = 68.6 bits (166), Expect(3) = 1e-20
Identities = 31/47 (65%), Positives = 40/47 (84%)
Frame = -2
Query: 672 VQKVSEKVSLASELMCNYLSRDVTASFGYDYILSQCRLRGKVDSHAL 532
VQK+S+KVSLA++ M NY SRDVTAS GYDY+L Q R+RGK+DS+ +
Sbjct: 226 VQKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQARVRGKIDSNGV 272
Score = 40.8 bits (94), Expect(3) = 1e-20
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -3
Query: 524 ALLEERLNMDLNFILSAELDHQAK 453
ALLEERL+M LNF+LSAELDH+ K
Sbjct: 275 ALLEERLSMGLNFLLSAELDHKKK 298
Score = 32.3 bits (72), Expect(3) = 1e-20
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -1
Query: 460 KQKDYKFGFGLTVG 419
K+KDYKFGFGLTVG
Sbjct: 296 KKKDYKFGFGLTVG 309
>dbj|BAB03165.1| membrane import protein-like [Arabidopsis thaliana]
Length = 290
Score = 68.6 bits (166), Expect(3) = 1e-20
Identities = 31/47 (65%), Positives = 40/47 (84%)
Frame = -2
Query: 672 VQKVSEKVSLASELMCNYLSRDVTASFGYDYILSQCRLRGKVDSHAL 532
VQK+S+KVSLA++ M NY SRDVTAS GYDY+L Q R+RGK+DS+ +
Sbjct: 207 VQKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQARVRGKIDSNGV 253
Score = 40.8 bits (94), Expect(3) = 1e-20
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -3
Query: 524 ALLEERLNMDLNFILSAELDHQAK 453
ALLEERL+M LNF+LSAELDH+ K
Sbjct: 256 ALLEERLSMGLNFLLSAELDHKKK 279
Score = 32.3 bits (72), Expect(3) = 1e-20
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -1
Query: 460 KQKDYKFGFGLTVG 419
K+KDYKFGFGLTVG
Sbjct: 277 KKKDYKFGFGLTVG 290
>dbj|BAA88180.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 290
Score = 61.6 bits (148), Expect(3) = 2e-16
Identities = 26/40 (65%), Positives = 36/40 (90%)
Frame = -2
Query: 651 VSLASELMCNYLSRDVTASFGYDYILSQCRLRGKVDSHAL 532
VSLAS+ M N++++DVTASFGYDY+L QCRLRGK+D++ +
Sbjct: 213 VSLASDFMYNHMAKDVTASFGYDYMLRQCRLRGKIDTNGV 252
Score = 37.4 bits (85), Expect(3) = 2e-16
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -3
Query: 530 VGALLEERLNMDLNFILSAELDHQAK 453
V ALLEERL +NF+LSAELDH K
Sbjct: 253 VSALLEERLTPGVNFVLSAELDHWKK 278
Score = 28.5 bits (62), Expect(3) = 2e-16
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 457 QKDYKFGFGLTVGE 416
+KDYKFGFG+ +GE
Sbjct: 277 KKDYKFGFGMVLGE 290
>ref|NP_175457.1| hypothetical protein; protein id: At1g50400.1 [Arabidopsis
thaliana]
Length = 310
Score = 62.8 bits (151), Expect(2) = 2e-12
Identities = 31/47 (65%), Positives = 37/47 (77%)
Frame = -2
Query: 672 VQKVSEKVSLASELMCNYLSRDVTASFGYDYILSQCRLRGKVDSHAL 532
V KVSEK+S A++ + NYLSRDVTAS GYD I Q RLRGKVDS+ +
Sbjct: 227 VHKVSEKLSFATDFIYNYLSRDVTASVGYDLITRQSRLRGKVDSNGV 273
Score = 31.6 bits (70), Expect(2) = 2e-12
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = -3
Query: 530 VGALLEERLNMDLNFILSAELDHQAK 453
V A LEE+L + L F+LSAE+DH K
Sbjct: 274 VAAYLEEQLPIGLRFLLSAEVDHVKK 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,743,404
Number of Sequences: 1393205
Number of extensions: 11603498
Number of successful extensions: 33247
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33244
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
