KMC001780A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC001780A_C02 KMC001780A_c02
gGATAAAGCAAAGTTAATTAAATAGATAGATTGAATAAATGAATTGAATTATATGATAAT
GAATGACTGTCAAAATACAATGTAGAAGAAATCCTAAAACCAGCTAATAAGCTCCAAGTC
CAGCTAGCTAGCTAGCTACTGTATATGTACAAGAACAAATCAAATCCCAATTCCCAAACA
ATTGCAAAAGCTAATTAAGCACTAATTAACTTTGATCTAAATGCATTAATTAATTAATAA
TAATGAGGGATTTCAATCTGGGGCAAAAGACGTGGCTTCTTCGAAGGCAGGGGACTGGAA
ACCTCTTCTTCCACGAAAAATTTGCTGGCGGAGAAGTCCGGAAAAGCCGGCAGGTTCAGA
TCGAAGTTGCGCTGGTGGCTGTGTGTGGATCCCACACCTTCCGATGCGGTGGCTGTGGCG
GTGCTACTAGCACCACCACCGCCTTCATAGTGGCAACGCTTGTGTCCTCCCAAGGCCTGT
CCTGTAGGGAAGGATTTCTGGCAGATGGAGCACTGGTGGACCTTGCCTCCACCGTTGGAG
GCAGAGCTGGTGGTCACGGCGGAGGAGGTGGAGTGGTCCTCAGCGGCGGCGCCGGCGAGT
TTCCGGTGGCTGGCCTTGTGTCCGCCAAGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001780A_C02 KMC001780A_c02
         (630 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB77055.1| putative TFIIIA (or kruppel)-like zinc finger pr...   177  1e-43
pir||T09602 probable zinc finger protein SCOF-1, cold-inducible ...   160  1e-38
dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida]               147  9e-35
gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata]    143  2e-33
gb|AAF24959.1|AC012375_22 T22C5.18 [Arabidopsis thaliana]             137  2e-31

>emb|CAB77055.1| putative TFIIIA (or kruppel)-like zinc finger protein [Medicago
           sativa]
          Length = 235

 Score =  177 bits (449), Expect = 1e-43
 Identities = 95/139 (68%), Positives = 107/139 (76%), Gaps = 8/139 (5%)
 Frame = -2

Query: 629 LGGHKASHRK--LAGAAAEDH--STSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGH 462
           LGGHKASHRK  ++   AED   +TSSAVTTSSASNG  K H+CSIC KSFPTGQALGGH
Sbjct: 99  LGGHKASHRKAVMSATTAEDQITTTSSAVTTSSASNGKNKTHECSICHKSFPTGQALGGH 158

Query: 461 KRCHYEG----GGGASSTATATASEGVGSTHSHQRNFDLNLPAFPDFSASKFFVEEEVSS 294
           KRCHYEG    G GA S A  TASEGVG +HSH R+FDLNLPAFPDFS  KFFV++EV S
Sbjct: 159 KRCHYEGSVGAGAGAGSNA-VTASEGVGLSHSHHRDFDLNLPAFPDFS-KKFFVDDEVFS 216

Query: 293 PLPSKKPRLLPQIEIPHYY 237
           PLP+ K   L ++EIP +Y
Sbjct: 217 PLPAAKKPCLFKLEIPSHY 235

>pir||T09602 probable zinc finger protein SCOF-1, cold-inducible - soybean
           gi|1763063|gb|AAB39638.1| SCOF-1 [Glycine max]
          Length = 240

 Score =  160 bits (406), Expect = 1e-38
 Identities = 91/144 (63%), Positives = 103/144 (71%), Gaps = 14/144 (9%)
 Frame = -2

Query: 629 LGGHKASHRKLAGAAAEDH---STSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHK 459
           LGGHKASHRKLAGAA +     +TSSA  TSSAS  GGK H+CSIC KSFPTGQALGGHK
Sbjct: 100 LGGHKASHRKLAGAAEDQPPSTTTSSAAATSSAS--GGKAHECSICHKSFPTGQALGGHK 157

Query: 458 RCHYEGGGGA----SSTATATASEGVGSTHS----HQRNFDLNLPAFPDFSASKFFVEEE 303
           RCHYEG G      S++    ASEGVGSTH+    H R+FDLN+PAFPDFS      E+E
Sbjct: 158 RCHYEGNGNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTK--VGEDE 215

Query: 302 VSSPLP-SKKPRL--LPQIEIPHY 240
           V SP P  KKPRL  +P+IEIP +
Sbjct: 216 VESPHPVMKKPRLFVIPKIEIPQF 239

>dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida]
          Length = 253

 Score =  147 bits (372), Expect = 9e-35
 Identities = 78/137 (56%), Positives = 95/137 (68%), Gaps = 10/137 (7%)
 Frame = -2

Query: 629 LGGHKASHRKLAGAAAEDHSTSSAVT----TSSAS-NGGGKVHQCSICQKSFPTGQALGG 465
           LGGHKASHRKL     ++ ST+S  T    TSSA+ NG G+ H+CSIC K FPTGQALGG
Sbjct: 113 LGGHKASHRKLVSMGGDEQSTTSTTTNVTGTSSANVNGNGRTHECSICHKCFPTGQALGG 172

Query: 464 HKRCHYEGG---GGASSTATATASEGVGSTHSHQRNFDLNLPAFPDFSASKFFVEEEVSS 294
           HKRCHY+GG   G  S +   T+SEGVGST SH R+FDLN+PA P+F       E+EV S
Sbjct: 173 HKRCHYDGGNGNGNGSVSVGVTSSEGVGSTISHHRDFDLNIPALPEFWPGFGSGEDEVES 232

Query: 293 PLPSKKPRLL--PQIEI 249
           P P+KK RL   P++E+
Sbjct: 233 PHPAKKSRLSLPPKLEL 249

>gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata]
          Length = 247

 Score =  143 bits (361), Expect = 2e-33
 Identities = 85/145 (58%), Positives = 99/145 (67%), Gaps = 23/145 (15%)
 Frame = -2

Query: 629 LGGHKASHRKLAGAAAEDHSTSSA------VTTSSASNGGGKVHQCSICQKSFPTGQALG 468
           LGGHKASHRKLAG   ED STS A      VTT++AS GGG+ H+CSIC KSFPTGQALG
Sbjct: 104 LGGHKASHRKLAGG--EDQSTSFATTNSATVTTTTASGGGGRSHECSICHKSFPTGQALG 161

Query: 467 GHKRCHYEGGGGASS-----TATATASEG-------VGSTH--SH-QRNFDLNLPAFPDF 333
           GHKRCHYEG  G +S       T + S G       VGSTH  SH  R+FDLN+PA P+F
Sbjct: 162 GHKRCHYEGSIGGNSIHHHNNTTNSGSNGGMSMTSEVGSTHTVSHSHRDFDLNIPALPEF 221

Query: 332 SASKFFV--EEEVSSPLPSKKPRLL 264
             S FF+  ++EV SP P+KKPR+L
Sbjct: 222 -RSNFFISGDDEVESPHPAKKPRIL 245

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
 Frame = -2

Query: 602 KLAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYEGGGG--- 432
           ++A A   D  +S  +   + ++     ++CS+C K+F + QALGGHK  H +  GG   
Sbjct: 61  RVASANRRDSQSSIQIQPEATTSATKVSYKCSVCDKAFSSYQALGGHKASHRKLAGGEDQ 120

Query: 431 --------ASSTATATASEGVGSTH 381
                   +++  T TAS G G +H
Sbjct: 121 STSFATTNSATVTTTTASGGGGRSH 145

>gb|AAF24959.1|AC012375_22 T22C5.18 [Arabidopsis thaliana]
          Length = 265

 Score =  137 bits (344), Expect = 2e-31
 Identities = 73/128 (57%), Positives = 89/128 (69%), Gaps = 8/128 (6%)
 Frame = -2

Query: 629 LGGHKASHRK-----LAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGG 465
           LGGHKASHRK     L+G   +DHSTSSA TTS+ + G GK H C+IC KSFP+GQALGG
Sbjct: 133 LGGHKASHRKNLSQTLSGGG-DDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGG 191

Query: 464 HKRCHYEGGGGASSTATATASEGVGST---HSHQRNFDLNLPAFPDFSASKFFVEEEVSS 294
           HKRCHYEG     +T++ + SEG GST    S  R FDLN+P  P+FS      ++EV S
Sbjct: 192 HKRCHYEGNNNI-NTSSVSNSEGAGSTSHVSSSHRGFDLNIPPIPEFSMVN--GDDEVMS 248

Query: 293 PLPSKKPR 270
           P+P+KKPR
Sbjct: 249 PMPAKKPR 256

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,867,843
Number of Sequences: 1393205
Number of extensions: 17058544
Number of successful extensions: 231477
Number of sequences better than 10.0: 2601
Number of HSP's better than 10.0 without gapping: 90049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178944
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD052c06_f BP048135 1 482
2 MR080c03_f BP082142 2 366
3 SPD075h02_f BP050031 2 586
4 MF015a11_f BP029014 16 507
5 MWM035g07_f AV765223 16 320
6 GNf084f09 BP073580 28 456
7 MFB074c06_f BP039378 28 515
8 MR031a02_f BP078349 28 447
9 MR052h02_f BP080040 28 442
10 MFB084c02_f BP040130 28 434
11 GNf046c12 BP070751 32 341
12 GNf081g01 BP073365 32 447
13 GNf051c07 BP071136 33 465
14 GNf094d08 BP074326 33 540
15 GNf053f01 BP071325 33 549
16 MFB094h10_f BP040886 33 598
17 MWM092b05_f AV766234 33 552
18 MR051d10_f BP079944 33 535
19 GNf059a06 BP071720 34 453
20 GENf053g03 BP060622 34 483
21 MR079b05_f BP082056 36 443
22 MFB068g04_f BP038959 37 264
23 GENf083d01 BP061885 41 349
24 MFB019g03_f BP035365 47 520
25 MFB033c06_f BP036407 84 655
26 GENf015b10 BP058966 227 592




Lotus japonicus
Kazusa DNA Research Institute