KMC001780A_c02
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001780A_C02 KMC001780A_c02
gGATAAAGCAAAGTTAATTAAATAGATAGATTGAATAAATGAATTGAATTATATGATAAT
GAATGACTGTCAAAATACAATGTAGAAGAAATCCTAAAACCAGCTAATAAGCTCCAAGTC
CAGCTAGCTAGCTAGCTACTGTATATGTACAAGAACAAATCAAATCCCAATTCCCAAACA
ATTGCAAAAGCTAATTAAGCACTAATTAACTTTGATCTAAATGCATTAATTAATTAATAA
TAATGAGGGATTTCAATCTGGGGCAAAAGACGTGGCTTCTTCGAAGGCAGGGGACTGGAA
ACCTCTTCTTCCACGAAAAATTTGCTGGCGGAGAAGTCCGGAAAAGCCGGCAGGTTCAGA
TCGAAGTTGCGCTGGTGGCTGTGTGTGGATCCCACACCTTCCGATGCGGTGGCTGTGGCG
GTGCTACTAGCACCACCACCGCCTTCATAGTGGCAACGCTTGTGTCCTCCCAAGGCCTGT
CCTGTAGGGAAGGATTTCTGGCAGATGGAGCACTGGTGGACCTTGCCTCCACCGTTGGAG
GCAGAGCTGGTGGTCACGGCGGAGGAGGTGGAGTGGTCCTCAGCGGCGGCGCCGGCGAGT
TTCCGGTGGCTGGCCTTGTGTCCGCCAAGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001780A_C02 KMC001780A_c02
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB77055.1| putative TFIIIA (or kruppel)-like zinc finger pr... 177 1e-43
pir||T09602 probable zinc finger protein SCOF-1, cold-inducible ... 160 1e-38
dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida] 147 9e-35
gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata] 143 2e-33
gb|AAF24959.1|AC012375_22 T22C5.18 [Arabidopsis thaliana] 137 2e-31
>emb|CAB77055.1| putative TFIIIA (or kruppel)-like zinc finger protein [Medicago
sativa]
Length = 235
Score = 177 bits (449), Expect = 1e-43
Identities = 95/139 (68%), Positives = 107/139 (76%), Gaps = 8/139 (5%)
Frame = -2
Query: 629 LGGHKASHRK--LAGAAAEDH--STSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGH 462
LGGHKASHRK ++ AED +TSSAVTTSSASNG K H+CSIC KSFPTGQALGGH
Sbjct: 99 LGGHKASHRKAVMSATTAEDQITTTSSAVTTSSASNGKNKTHECSICHKSFPTGQALGGH 158
Query: 461 KRCHYEG----GGGASSTATATASEGVGSTHSHQRNFDLNLPAFPDFSASKFFVEEEVSS 294
KRCHYEG G GA S A TASEGVG +HSH R+FDLNLPAFPDFS KFFV++EV S
Sbjct: 159 KRCHYEGSVGAGAGAGSNA-VTASEGVGLSHSHHRDFDLNLPAFPDFS-KKFFVDDEVFS 216
Query: 293 PLPSKKPRLLPQIEIPHYY 237
PLP+ K L ++EIP +Y
Sbjct: 217 PLPAAKKPCLFKLEIPSHY 235
>pir||T09602 probable zinc finger protein SCOF-1, cold-inducible - soybean
gi|1763063|gb|AAB39638.1| SCOF-1 [Glycine max]
Length = 240
Score = 160 bits (406), Expect = 1e-38
Identities = 91/144 (63%), Positives = 103/144 (71%), Gaps = 14/144 (9%)
Frame = -2
Query: 629 LGGHKASHRKLAGAAAEDH---STSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHK 459
LGGHKASHRKLAGAA + +TSSA TSSAS GGK H+CSIC KSFPTGQALGGHK
Sbjct: 100 LGGHKASHRKLAGAAEDQPPSTTTSSAAATSSAS--GGKAHECSICHKSFPTGQALGGHK 157
Query: 458 RCHYEGGGGA----SSTATATASEGVGSTHS----HQRNFDLNLPAFPDFSASKFFVEEE 303
RCHYEG G S++ ASEGVGSTH+ H R+FDLN+PAFPDFS E+E
Sbjct: 158 RCHYEGNGNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTK--VGEDE 215
Query: 302 VSSPLP-SKKPRL--LPQIEIPHY 240
V SP P KKPRL +P+IEIP +
Sbjct: 216 VESPHPVMKKPRLFVIPKIEIPQF 239
>dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida]
Length = 253
Score = 147 bits (372), Expect = 9e-35
Identities = 78/137 (56%), Positives = 95/137 (68%), Gaps = 10/137 (7%)
Frame = -2
Query: 629 LGGHKASHRKLAGAAAEDHSTSSAVT----TSSAS-NGGGKVHQCSICQKSFPTGQALGG 465
LGGHKASHRKL ++ ST+S T TSSA+ NG G+ H+CSIC K FPTGQALGG
Sbjct: 113 LGGHKASHRKLVSMGGDEQSTTSTTTNVTGTSSANVNGNGRTHECSICHKCFPTGQALGG 172
Query: 464 HKRCHYEGG---GGASSTATATASEGVGSTHSHQRNFDLNLPAFPDFSASKFFVEEEVSS 294
HKRCHY+GG G S + T+SEGVGST SH R+FDLN+PA P+F E+EV S
Sbjct: 173 HKRCHYDGGNGNGNGSVSVGVTSSEGVGSTISHHRDFDLNIPALPEFWPGFGSGEDEVES 232
Query: 293 PLPSKKPRLL--PQIEI 249
P P+KK RL P++E+
Sbjct: 233 PHPAKKSRLSLPPKLEL 249
>gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata]
Length = 247
Score = 143 bits (361), Expect = 2e-33
Identities = 85/145 (58%), Positives = 99/145 (67%), Gaps = 23/145 (15%)
Frame = -2
Query: 629 LGGHKASHRKLAGAAAEDHSTSSA------VTTSSASNGGGKVHQCSICQKSFPTGQALG 468
LGGHKASHRKLAG ED STS A VTT++AS GGG+ H+CSIC KSFPTGQALG
Sbjct: 104 LGGHKASHRKLAGG--EDQSTSFATTNSATVTTTTASGGGGRSHECSICHKSFPTGQALG 161
Query: 467 GHKRCHYEGGGGASS-----TATATASEG-------VGSTH--SH-QRNFDLNLPAFPDF 333
GHKRCHYEG G +S T + S G VGSTH SH R+FDLN+PA P+F
Sbjct: 162 GHKRCHYEGSIGGNSIHHHNNTTNSGSNGGMSMTSEVGSTHTVSHSHRDFDLNIPALPEF 221
Query: 332 SASKFFV--EEEVSSPLPSKKPRLL 264
S FF+ ++EV SP P+KKPR+L
Sbjct: 222 -RSNFFISGDDEVESPHPAKKPRIL 245
Score = 48.1 bits (113), Expect = 9e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Frame = -2
Query: 602 KLAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYEGGGG--- 432
++A A D +S + + ++ ++CS+C K+F + QALGGHK H + GG
Sbjct: 61 RVASANRRDSQSSIQIQPEATTSATKVSYKCSVCDKAFSSYQALGGHKASHRKLAGGEDQ 120
Query: 431 --------ASSTATATASEGVGSTH 381
+++ T TAS G G +H
Sbjct: 121 STSFATTNSATVTTTTASGGGGRSH 145
>gb|AAF24959.1|AC012375_22 T22C5.18 [Arabidopsis thaliana]
Length = 265
Score = 137 bits (344), Expect = 2e-31
Identities = 73/128 (57%), Positives = 89/128 (69%), Gaps = 8/128 (6%)
Frame = -2
Query: 629 LGGHKASHRK-----LAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGG 465
LGGHKASHRK L+G +DHSTSSA TTS+ + G GK H C+IC KSFP+GQALGG
Sbjct: 133 LGGHKASHRKNLSQTLSGGG-DDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGG 191
Query: 464 HKRCHYEGGGGASSTATATASEGVGST---HSHQRNFDLNLPAFPDFSASKFFVEEEVSS 294
HKRCHYEG +T++ + SEG GST S R FDLN+P P+FS ++EV S
Sbjct: 192 HKRCHYEGNNNI-NTSSVSNSEGAGSTSHVSSSHRGFDLNIPPIPEFSMVN--GDDEVMS 248
Query: 293 PLPSKKPR 270
P+P+KKPR
Sbjct: 249 PMPAKKPR 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,867,843
Number of Sequences: 1393205
Number of extensions: 17058544
Number of successful extensions: 231477
Number of sequences better than 10.0: 2601
Number of HSP's better than 10.0 without gapping: 90049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178944
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
SPD052c06_f |
BP048135 |
1 |
482 |
2 |
MR080c03_f |
BP082142 |
2 |
366 |
3 |
SPD075h02_f |
BP050031 |
2 |
586 |
4 |
MF015a11_f |
BP029014 |
16 |
507 |
5 |
MWM035g07_f |
AV765223 |
16 |
320 |
6 |
GNf084f09 |
BP073580 |
28 |
456 |
7 |
MFB074c06_f |
BP039378 |
28 |
515 |
8 |
MR031a02_f |
BP078349 |
28 |
447 |
9 |
MR052h02_f |
BP080040 |
28 |
442 |
10 |
MFB084c02_f |
BP040130 |
28 |
434 |
11 |
GNf046c12 |
BP070751 |
32 |
341 |
12 |
GNf081g01 |
BP073365 |
32 |
447 |
13 |
GNf051c07 |
BP071136 |
33 |
465 |
14 |
GNf094d08 |
BP074326 |
33 |
540 |
15 |
GNf053f01 |
BP071325 |
33 |
549 |
16 |
MFB094h10_f |
BP040886 |
33 |
598 |
17 |
MWM092b05_f |
AV766234 |
33 |
552 |
18 |
MR051d10_f |
BP079944 |
33 |
535 |
19 |
GNf059a06 |
BP071720 |
34 |
453 |
20 |
GENf053g03 |
BP060622 |
34 |
483 |
21 |
MR079b05_f |
BP082056 |
36 |
443 |
22 |
MFB068g04_f |
BP038959 |
37 |
264 |
23 |
GENf083d01 |
BP061885 |
41 |
349 |
24 |
MFB019g03_f |
BP035365 |
47 |
520 |
25 |
MFB033c06_f |
BP036407 |
84 |
655 |
26 |
GENf015b10 |
BP058966 |
227 |
592 |
|
Lotus japonicus
Kazusa DNA Research Institute