Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001779A_C01 KMC001779A_c01
(372 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196846.1| transaldolase - like protein; protein id: At5g1... 59 1e-08
gb|AAG16981.1|AF184164_1 transaldolase [Lycopersicon esculentum] 56 1e-07
pir||T07790 transaldolase (EC 2.2.1.2) - potato gi|2078350|gb|AA... 55 2e-07
dbj|BAB89667.1| putative transaldolase [Oryza sativa (japonica c... 54 5e-07
ref|ZP_00071904.1| hypothetical protein [Trichodesmium erythraeu... 31 3.4
>ref|NP_196846.1| transaldolase - like protein; protein id: At5g13420.1, supported by
cDNA: 32114., supported by cDNA: gi_21280862
[Arabidopsis thaliana] gi|11358882|pir||T48589
transaldolase-like protein - Arabidopsis thaliana
gi|7543909|emb|CAB87149.1| transaldolase-like protein
[Arabidopsis thaliana] gi|15810515|gb|AAL07145.1|
putative transaldolase [Arabidopsis thaliana]
gi|21280863|gb|AAM45123.1| putative transaldolase
[Arabidopsis thaliana] gi|21592744|gb|AAM64693.1|
transaldolase-like protein [Arabidopsis thaliana]
Length = 438
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/37 (72%), Positives = 32/37 (85%)
Frame = -2
Query: 371 NVSEAQGIYNAIERLGIDWNAVGSQLEHEVLDSFTKS 261
NVSEA+GIY+A+E+LGIDWN VG QLE E +DSF KS
Sbjct: 382 NVSEAEGIYSALEKLGIDWNKVGEQLEDEGVDSFKKS 418
>gb|AAG16981.1|AF184164_1 transaldolase [Lycopersicon esculentum]
Length = 437
Score = 56.2 bits (134), Expect = 1e-07
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = -2
Query: 371 NVSEAQGIYNAIERLGIDWNAVGSQLEHEVLDSFTKS 261
N+SEA+GIY+A+E+LGIDW VGSQLE E +DSF KS
Sbjct: 381 NLSEAEGIYSALEKLGIDWGFVGSQLELEGVDSFKKS 417
>pir||T07790 transaldolase (EC 2.2.1.2) - potato gi|2078350|gb|AAB54016.1|
transaldolase [Solanum tuberosum]
Length = 438
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = -2
Query: 371 NVSEAQGIYNAIERLGIDWNAVGSQLEHEVLDSFTKS 261
N+SEA+GIY+A+E+LGIDW VGSQLE E +DSF KS
Sbjct: 382 NLSEAEGIYSALEKLGIDWVFVGSQLELEGVDSFKKS 418
>dbj|BAB89667.1| putative transaldolase [Oryza sativa (japonica cultivar-group)]
gi|20805223|dbj|BAB92890.1| putative transaldolase
[Oryza sativa (japonica cultivar-group)]
Length = 517
Score = 53.9 bits (128), Expect = 5e-07
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = -2
Query: 371 NVSEAQGIYNAIERLGIDWNAVGSQLEHEVLDSFTKS 261
NVS+A+G+Y+A+E+LGIDW+ VG QLE E +DSF K+
Sbjct: 460 NVSDAEGVYSALEKLGIDWDEVGKQLELEGVDSFKKA 496
>ref|ZP_00071904.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 105
Score = 31.2 bits (69), Expect = 3.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +1
Query: 88 LDSINPMLHMHPVLFKAKVPKYFGPWQLY*YILEAK 195
LD +NP+L HP KAKV Y WQ Y + AK
Sbjct: 2 LDFLNPILGRHPERMKAKVEIY--TWQTCPYCIRAK 35
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320,921,876
Number of Sequences: 1393205
Number of extensions: 6044779
Number of successful extensions: 16890
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16871
length of database: 448,689,247
effective HSP length: 99
effective length of database: 310,761,952
effective search space used: 7458286848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
