Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001778A_C02 KMC001778A_c02
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180595.1| putative protein kinase; protein id: At2g30360.... 37 0.13
ref|NP_059389.1| orf265_2 [Paramecium aurelia] 35 0.39
ref|NP_012895.1| Hypothetical ORF; Ykl030wp [Saccharomyces cerev... 35 0.51
pir||S24949 pollen-specific protein Bp10 (clone Bp 1001) - rape ... 34 0.87
ref|NP_595187.1| very hypothetical protein [Schizosaccharomyces ... 34 1.1
>ref|NP_180595.1| putative protein kinase; protein id: At2g30360.1, supported by
cDNA: gi_13448034, supported by cDNA: gi_13877672,
supported by cDNA: gi_16226429 [Arabidopsis thaliana]
gi|25387037|pir||E84707 probable protein kinase
[imported] - Arabidopsis thaliana
gi|2347199|gb|AAC16938.1| putative protein kinase
[Arabidopsis thaliana]
gi|13249121|gb|AAK16686.1|AF295666_1 CBL-interacting
protein kinase 11 [Arabidopsis thaliana]
gi|13448035|gb|AAK26844.1|AF339146_1 SOS2-like protein
kinase PKS5 [Arabidopsis thaliana]
gi|13877673|gb|AAK43914.1|AF370595_1 putative protein
kinase [Arabidopsis thaliana] gi|27311745|gb|AAO00838.1|
putative protein kinase [Arabidopsis thaliana]
Length = 435
Score = 37.0 bits (84), Expect = 0.13
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2
Query: 516 YGIGIDVSRLTAELXVXEXKMRGVDAVHLRNLWDEKLKPQLL 391
+GIGI +SRL L V E + RG D + +W+ KL+ QL+
Sbjct: 381 FGIGICISRLNDLLVVVEARRRGGDGDCYKEMWNGKLRVQLI 422
>ref|NP_059389.1| orf265_2 [Paramecium aurelia]
Length = 265
Score = 35.4 bits (80), Expect = 0.39
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 148 NFGINNNSNPIFLQLFV---FFFFFLTILIFELDLVFPNL 258
NF + N+ N FL F+ FFFF T+LIF +V NL
Sbjct: 144 NFNVMNDLNSFFLNFFIFNSFFFFLFTVLIFLTSVVCINL 183
>ref|NP_012895.1| Hypothetical ORF; Ykl030wp [Saccharomyces cerevisiae]
gi|549664|sp|P36099|YKD0_YEAST HYPOTHETICAL 23.0 KD
PROTEIN IN IXR1-TFA1 INTERGENIC REGION
gi|539152|pir||S37847 hypothetical protein YKL030w -
yeast (Saccharomyces cerevisiae)
gi|486029|emb|CAA81864.1| ORF YKL030w [Saccharomyces
cerevisiae]
Length = 201
Score = 35.0 bits (79), Expect = 0.51
Identities = 16/52 (30%), Positives = 25/52 (47%)
Frame = -1
Query: 172 CCCC*CQN*RLVR*DICPKCIICIFMFFVLFFGFVYYILKNKGVFFFKKKKK 17
CCCC C CII + +++ ++ + YY + +FF K KKK
Sbjct: 6 CCCCYCFY----------YCIIVLLLYYYYYYYYYYYYGMSSIIFFLKIKKK 47
>pir||S24949 pollen-specific protein Bp10 (clone Bp 1001) - rape
gi|17782|emb|CAA47176.1| Bplo [Brassica napus]
Length = 554
Score = 34.3 bits (77), Expect = 0.87
Identities = 19/57 (33%), Positives = 24/57 (41%), Gaps = 3/57 (5%)
Frame = +3
Query: 264 LNPFGNLKKK---VWERISFESNHWQPATPVTPAPLPDDTTSLHHLAAEA*AFHPRD 425
+N F NL + W I N WQ TP T P+P T +H F P+D
Sbjct: 70 INVFNNLDEPFLLTWNGIQHRKNCWQDGTPGTMCPIPAGTNYTYH-------FQPKD 119
>ref|NP_595187.1| very hypothetical protein [Schizosaccharomyces pombe]
gi|7493668|pir||T40461 very hypothetical protein
SPBC428.09c - fission yeast (Schizosaccharomyces pombe)
Length = 247
Score = 33.9 bits (76), Expect = 1.1
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 148 NFGINNNSNPIFLQLFVFFFFFL 216
N +NNN NP FL+++++FFF L
Sbjct: 174 NSHVNNNENPCFLRIYIYFFFQL 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,998,047
Number of Sequences: 1393205
Number of extensions: 9541150
Number of successful extensions: 35600
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 31381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35027
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
