Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001777A_C01 KMC001777A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD51733.1|AF174486_1 methylenetetrahydrofolate reductase [Ze... 282 2e-75
ref|NP_566011.1| putative methylenetetrahydrofolate reductase; p... 279 2e-74
emb|CAB53783.1| methylenetetrahydrofolate reductase [Arabidopsis... 277 8e-74
gb|AAK43892.1|AF370515_1 putative methylenetetrahydrofolate redu... 275 2e-73
pir||T00696 probable methylenetetrahydrofolate reductase [import... 270 1e-71
>gb|AAD51733.1|AF174486_1 methylenetetrahydrofolate reductase [Zea mays]
Length = 593
Score = 282 bits (722), Expect = 2e-75
Identities = 137/163 (84%), Positives = 147/163 (90%)
Frame = +3
Query: 84 MKVIEKIHEAAASDPNKVVFSFEFFPPKTEDGVVNLLERMDRMVAHSPSFCDITWGAGGS 263
MKVIEKI EAA + FSFE+FPPKTE+GV NL ERMDRMVAH PSFCDITWGAGGS
Sbjct: 1 MKVIEKILEAAGD--GRTAFSFEYFPPKTEEGVENLFERMDRMVAHGPSFCDITWGAGGS 58
Query: 264 TADVTLDIAKKMQNTVGVETMMHLTCTNMPVEKIDDALETIKSNGLQNVLALRGDPPHGQ 443
TAD+TL+IA +MQN V VETMMHLTCTNMPVEKID ALETIKSNG+QNVLALRGDPPHGQ
Sbjct: 59 TADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDHALETIKSNGIQNVLALRGDPPHGQ 118
Query: 444 DKFVQVEGGFACARDLVKHIRAKHGDYFGITIAGYPEAHPDAI 572
DKFVQVEGGFACA DLV+HIRAK+GDYFGIT+AGYPEAHPDAI
Sbjct: 119 DKFVQVEGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAI 161
>ref|NP_566011.1| putative methylenetetrahydrofolate reductase; protein id:
At2g44160.1, supported by cDNA: gi_13877628, supported
by cDNA: gi_15215809, supported by cDNA: gi_5911426
[Arabidopsis thaliana] gi|22096355|sp|O80585|MTHR_ARATH
Methylenetetrahydrofolate reductase (MTHFR2)
gi|5911427|gb|AAD55788.1|AF181967_1
methylenetetrahydrofolate reductase MTHFR2 [Arabidopsis
thaliana] gi|15215810|gb|AAK91450.1| At2g44160/F6E13.29
[Arabidopsis thaliana] gi|20197075|gb|AAC23420.2|
putative methylenetetrahydrofolate reductase
[Arabidopsis thaliana]
Length = 594
Score = 279 bits (713), Expect = 2e-74
Identities = 134/166 (80%), Positives = 145/166 (86%)
Frame = +3
Query: 84 MKVIEKIHEAAASDPNKVVFSFEFFPPKTEDGVVNLLERMDRMVAHSPSFCDITWGAGGS 263
MKVI+KI A D K FSFEFFPPKTEDGV NL ERMDRMVA+ P+FCDITWGAGGS
Sbjct: 1 MKVIDKIQSLA--DEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGS 58
Query: 264 TADVTLDIAKKMQNTVGVETMMHLTCTNMPVEKIDDALETIKSNGLQNVLALRGDPPHGQ 443
TAD+TLDIA +MQN V VE+MMHLTCTNMPVEKID ALETI+SNG+QNVLALRGDPPHGQ
Sbjct: 59 TADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQ 118
Query: 444 DKFVQVEGGFACARDLVKHIRAKHGDYFGITIAGYPEAHPDAIGSN 581
DKFVQVEGGF CA DLV HIR+K+GDYFGIT+AGYPEAHPD IG N
Sbjct: 119 DKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGEN 164
>emb|CAB53783.1| methylenetetrahydrofolate reductase [Arabidopsis thaliana]
Length = 594
Score = 277 bits (708), Expect = 8e-74
Identities = 133/166 (80%), Positives = 145/166 (87%)
Frame = +3
Query: 84 MKVIEKIHEAAASDPNKVVFSFEFFPPKTEDGVVNLLERMDRMVAHSPSFCDITWGAGGS 263
MKVI+KI A D K FSFEFFPPKTEDGV NL ERMDRMVA+ P+FCDITWGAGGS
Sbjct: 1 MKVIDKIQSLA--DEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGS 58
Query: 264 TADVTLDIAKKMQNTVGVETMMHLTCTNMPVEKIDDALETIKSNGLQNVLALRGDPPHGQ 443
TAD+TLDIA +MQ+ V VE+MMHLTCTNMPVEKID ALETI+SNG+QNVLALRGDPPHGQ
Sbjct: 59 TADLTLDIASRMQSVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQ 118
Query: 444 DKFVQVEGGFACARDLVKHIRAKHGDYFGITIAGYPEAHPDAIGSN 581
DKFVQVEGGF CA DLV HIR+K+GDYFGIT+AGYPEAHPD IG N
Sbjct: 119 DKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGEN 164
>gb|AAK43892.1|AF370515_1 putative methylenetetrahydrofolate reductase [Arabidopsis thaliana]
Length = 594
Score = 275 bits (704), Expect = 2e-73
Identities = 133/166 (80%), Positives = 144/166 (86%)
Frame = +3
Query: 84 MKVIEKIHEAAASDPNKVVFSFEFFPPKTEDGVVNLLERMDRMVAHSPSFCDITWGAGGS 263
MKVI+KI A D K FSFEFFPPKTEDGV NL ERMDRMVA+ P+FCDITWGAGGS
Sbjct: 1 MKVIDKIQSLA--DEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGS 58
Query: 264 TADVTLDIAKKMQNTVGVETMMHLTCTNMPVEKIDDALETIKSNGLQNVLALRGDPPHGQ 443
TAD+TLDIA +MQN V VE+MMHLTCTNMPVEKID ALETI+SNG+QNVLALRGDP HGQ
Sbjct: 59 TADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPHHGQ 118
Query: 444 DKFVQVEGGFACARDLVKHIRAKHGDYFGITIAGYPEAHPDAIGSN 581
DKFVQVEGGF CA DLV HIR+K+GDYFGIT+AGYPEAHPD IG N
Sbjct: 119 DKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGEN 164
>pir||T00696 probable methylenetetrahydrofolate reductase [imported] -
Arabidopsis thaliana
Length = 606
Score = 270 bits (690), Expect = 1e-71
Identities = 134/178 (75%), Positives = 145/178 (81%), Gaps = 12/178 (6%)
Frame = +3
Query: 84 MKVIEKIHEAAASDPNKVVFSFEFFPPKTEDGVVNLLERMDRMVAHSPSFCDITWGAGGS 263
MKVI+KI A D K FSFEFFPPKTEDGV NL ERMDRMVA+ P+FCDITWGAGGS
Sbjct: 1 MKVIDKIQSLA--DEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGS 58
Query: 264 TADVTLDIAKKMQNTVGVETMMHLTCTNMPVEKIDDALETIKSNGLQNVLALRGDPPHGQ 443
TAD+TLDIA +MQN V VE+MMHLTCTNMPVEKID ALETI+SNG+QNVLALRGDPPHGQ
Sbjct: 59 TADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQ 118
Query: 444 DKFVQVEGGFACARDLVKHIRAKHGDYFGITIAGYP------------EAHPDAIGSN 581
DKFVQVEGGF CA DLV HIR+K+GDYFGIT+AGYP EAHPD IG N
Sbjct: 119 DKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPAKDWIFMCFDISEAHPDVIGEN 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,646,332
Number of Sequences: 1393205
Number of extensions: 13591215
Number of successful extensions: 36993
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 34940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36803
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
