Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001772A_C01 KMC001772A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA12248.1| agCP11008 [Anopheles gambiae str. PEST] 45 9e-04
emb|CAA86260.1| len: 750, CAI: 0.14, incomplete ORF, PIF_YEAST P... 44 0.002
ref|NP_013650.1| involved in repair and recombination of mitocho... 44 0.002
sp|P07271|PIF1_YEAST DNA repair and recombination protein PIF1, ... 44 0.002
gb|AAH45956.1| Similar to hypothetical protein 4631410M14 [Danio... 44 0.002
>gb|EAA12248.1| agCP11008 [Anopheles gambiae str. PEST]
Length = 686
Score = 44.7 bits (104), Expect = 9e-04
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +1
Query: 82 QWGNEQKHILSAIPQGKSVFITGSAGTGKIVLLEEILKLL 201
Q EQK ILSA G+S+F TGSAGTGK LL +I+ L
Sbjct: 223 QLNEEQKRILSASQSGQSLFFTGSAGTGKSFLLRKIIAAL 262
>emb|CAA86260.1| len: 750, CAI: 0.14, incomplete ORF, PIF_YEAST P0727 1
MITOCHONDRIAL DNA REPAIR AND RECOMBINATION PROTEIN PIF1
PRECURSOR [Saccharomyces cerevisiae]
Length = 750
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (68%)
Frame = +1
Query: 94 EQKHILSAIPQGKSVFITGSAGTGKIVLLEEILKLLNILYSQ 219
EQ+ I+ G ++F TGSAGTGK +LL E++K+L +Y +
Sbjct: 131 EQESIIKLAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGR 172
>ref|NP_013650.1| involved in repair and recombination of mitochondrial DNA; also
plays a role in (nuclear) chromosomal telomere formation
and elongation; Pif1p [Saccharomyces cerevisiae]
Length = 859
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (68%)
Frame = +1
Query: 94 EQKHILSAIPQGKSVFITGSAGTGKIVLLEEILKLLNILYSQ 219
EQ+ I+ G ++F TGSAGTGK +LL E++K+L +Y +
Sbjct: 240 EQESIIKLAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGR 281
>sp|P07271|PIF1_YEAST DNA repair and recombination protein PIF1, mitochondrial precursor
gi|83385|pir||A29457 PIF1 protein precursor - yeast
(Saccharomyces cerevisiae) gi|4178|emb|CAA28953.1| PIF
gene product (AA 1-857) [Saccharomyces cerevisiae]
Length = 857
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (68%)
Frame = +1
Query: 94 EQKHILSAIPQGKSVFITGSAGTGKIVLLEEILKLLNILYSQ 219
EQ+ I+ G ++F TGSAGTGK +LL E++K+L +Y +
Sbjct: 240 EQESIIKLAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGR 281
>gb|AAH45956.1| Similar to hypothetical protein 4631410M14 [Danio rerio]
Length = 639
Score = 43.5 bits (101), Expect = 0.002
Identities = 22/45 (48%), Positives = 30/45 (65%)
Frame = +1
Query: 58 VHVTLITQQWGNEQKHILSAIPQGKSVFITGSAGTGKIVLLEEIL 192
V V + Q+ EQ +L+A+ GK+VF TGSAGTGK LL+ I+
Sbjct: 198 VLVLPVAQKLSKEQTAVLNAVLSGKNVFFTGSAGTGKSFLLKRIV 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,589,582
Number of Sequences: 1393205
Number of extensions: 10131796
Number of successful extensions: 31771
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 29903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31710
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
