Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001771A_C01 KMC001771A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700724.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.37
dbj|BAB11446.1| NAM (no apical meristem)-like protein [Arabidops... 33 2.4
ref|NP_568182.1| NAM (no apical meristem)-like protein; protein ... 33 2.4
ref|NP_370768.1| hypothetical protein [Staphylococcus aureus sub... 33 2.4
ref|NP_645035.1| ORFID:MW0220~hypothetical protein, similar to B... 32 3.1
>ref|NP_700724.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495117|gb|AAN35448.1|AE014833_19 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4057
Score = 35.4 bits (80), Expect = 0.37
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 28 STKFIKL-SSNTTSKNYNKKDNVYIHFLYSLGHNINLNANYLHV*QC**LNFLISLNCKI 204
S FI L S+N+ S NY K ++ + F Y L +NINLN N + LNF ++C +
Sbjct: 2061 SNHFITLYSNNSYSINYTKNFSILLGFHYFLINNINLNKNDI-------LNF---ISCSV 2110
Query: 205 PTNLP*KFHR 234
+N+ F++
Sbjct: 2111 SSNVSLFFYK 2120
>dbj|BAB11446.1| NAM (no apical meristem)-like protein [Arabidopsis thaliana]
Length = 329
Score = 32.7 bits (73), Expect = 2.4
Identities = 26/83 (31%), Positives = 40/83 (47%), Gaps = 1/83 (1%)
Frame = -3
Query: 467 QIAQVGISQGSDYLMVQEESMLGMLIENQGSSTETKYQKAQERDF-DADNSSVMYNNQMF 291
Q + IS+ S+ ++ QE+S+L ++EN +QE + DNSSV +
Sbjct: 248 QPQSLNISESSNPVLTQEQSVLQAMMENNRRQNFKTLSISQETGVSNTDNSSVFEFGRKR 307
Query: 290 PMNQEFSSASVGQHVDTGFLWNF 222
+QE S S G VD WN+
Sbjct: 308 FDHQEVPSPSSGP-VDLEPFWNY 329
>ref|NP_568182.1| NAM (no apical meristem)-like protein; protein id: At5g07680.1,
supported by cDNA: 37792. [Arabidopsis thaliana]
gi|21593288|gb|AAM65237.1| NAM (no apical meristem)-like
protein [Arabidopsis thaliana]
Length = 315
Score = 32.7 bits (73), Expect = 2.4
Identities = 26/83 (31%), Positives = 40/83 (47%), Gaps = 1/83 (1%)
Frame = -3
Query: 467 QIAQVGISQGSDYLMVQEESMLGMLIENQGSSTETKYQKAQERDF-DADNSSVMYNNQMF 291
Q + IS+ S+ ++ QE+S+L ++EN +QE + DNSSV +
Sbjct: 234 QPQSLNISESSNPVLTQEQSVLQAMMENNRRQNFKTLSISQETGVSNTDNSSVFEFGRKR 293
Query: 290 PMNQEFSSASVGQHVDTGFLWNF 222
+QE S S G VD WN+
Sbjct: 294 FDHQEVPSPSSGP-VDLEPFWNY 315
>ref|NP_370768.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15925947|ref|NP_373480.1| hypothetical protein,
similar to BglG antiterminator family [Staphylococcus
aureus subsp. aureus N315] gi|25507483|pir||G89787
hypothetical protein SA0235 [imported] - Staphylococcus
aureus (strain N315) gi|13700159|dbj|BAB41458.1| SA0235
[Staphylococcus aureus subsp. aureus N315]
gi|14246011|dbj|BAB56406.1| hypothetical protein
[Staphylococcus aureus subsp. aureus Mu50]
Length = 698
Score = 32.7 bits (73), Expect = 2.4
Identities = 18/48 (37%), Positives = 26/48 (53%)
Frame = +2
Query: 326 QHQSPFPELSDTLSLYLILGFQSTSPAWTLLEP*DNLSPVKSQLVQFV 469
QH+ P+L + LYL L STS WT L+ DN+S + + Q +
Sbjct: 258 QHE---PDLPEAEKLYLTLHLLSTSVQWTDLQESDNISNLTMAIAQMI 302
>ref|NP_645035.1| ORFID:MW0220~hypothetical protein, similar to BglG antiterminator
family [Staphylococcus aureus subsp. aureus MW2]
gi|21203384|dbj|BAB94085.1| MW0220 [Staphylococcus
aureus subsp. aureus MW2]
Length = 698
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 344 PELSDTLSLYLILGFQSTSPAWTLLEP*DNLSPVKSQLVQFV 469
P+L + LYL L STS WT L+ DN+S + + Q +
Sbjct: 261 PDLPEAEKLYLTLHLLSTSVQWTDLQESDNISNLTMAIAQMI 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,039,821
Number of Sequences: 1393205
Number of extensions: 8427241
Number of successful extensions: 22126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22112
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
