Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001770A_C01 KMC001770A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92699.1| type 2A protein phosphatase-3 [Vicia faba] 127 9e-29
sp|Q06009|P2A_MEDSA SERINE/THREONINE PROTEIN PHOSPHATASE PP2A CA... 127 9e-29
sp|O04860|P2A5_TOBAC Serine/threonine protein phosphatase PP2A-5... 125 4e-28
pir||S31163 phosphoprotein phosphatase (EC 3.1.3.16) 2A-alpha ca... 124 1e-27
sp|Q9SBW3|P2A4_ORYSA Serine/threonine protein phosphatase PP2A-4... 124 1e-27
>dbj|BAA92699.1| type 2A protein phosphatase-3 [Vicia faba]
Length = 313
Score = 127 bits (320), Expect = 9e-29
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = -3
Query: 613 HDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 440
H+QKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 256 HEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
>sp|Q06009|P2A_MEDSA SERINE/THREONINE PROTEIN PHOSPHATASE PP2A CATALYTIC SUBUNIT
gi|486805|pir||S35502 phosphoprotein phosphatase (EC
3.1.3.16) 2A - alfalfa gi|287811|emb|CAA49849.1|
phosphoprotein phosphatase type 2A [Medicago sativa]
Length = 313
Score = 127 bits (320), Expect = 9e-29
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = -3
Query: 613 HDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 440
H+QKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 256 HEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
>sp|O04860|P2A5_TOBAC Serine/threonine protein phosphatase PP2A-5 catalytic subunit
gi|7435121|pir||T03600 phosphoprotein phosphatase (EC
3.1.3.16) 2A, npp5 - common tobacco
gi|1929412|emb|CAB07807.1| protein phosphatase type 2A
[Nicotiana tabacum]
Length = 314
Score = 125 bits (314), Expect = 4e-28
Identities = 55/58 (94%), Positives = 58/58 (99%)
Frame = -3
Query: 613 HDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 440
H+QKVVTIFSAPNYCYRCGNMASILEVDDC+GHTFIQF+PAPRRGEPDVTRRTPDYFL
Sbjct: 257 HEQKVVTIFSAPNYCYRCGNMASILEVDDCRGHTFIQFDPAPRRGEPDVTRRTPDYFL 314
>pir||S31163 phosphoprotein phosphatase (EC 3.1.3.16) 2A-alpha catalytic chain
(clone EP7) - Arabidopsis thaliana (fragment)
Length = 308
Score = 124 bits (311), Expect = 1e-27
Identities = 55/58 (94%), Positives = 57/58 (97%)
Frame = -3
Query: 613 HDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 440
H+QKVVTIFSAPNYCYRCGNMASILEVDDC+ HTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 251 HEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQFEPAPRRGEPDVTRRTPDYFL 308
>sp|Q9SBW3|P2A4_ORYSA Serine/threonine protein phosphatase PP2A-4 catalytic subunit
gi|5714762|gb|AAD48068.1|AF173881_1 serine/threonine
protein phosphatase PP2A-4 catalytic subunit [Oryza
sativa subsp. indica]
Length = 315
Score = 124 bits (311), Expect = 1e-27
Identities = 55/58 (94%), Positives = 57/58 (97%)
Frame = -3
Query: 613 HDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 440
H+QKVVTIFSAPNYCYRCGNMASILEVDDC+ HTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 258 HEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQFEPAPRRGEPDVTRRTPDYFL 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,779,886
Number of Sequences: 1393205
Number of extensions: 9882011
Number of successful extensions: 23843
Number of sequences better than 10.0: 308
Number of HSP's better than 10.0 without gapping: 22968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23796
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
