Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001764A_C03 KMC001764A_c03
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174210.1| 26S proteasome regulatory subunit (RPN6), putat... 229 2e-59
pir||T52033 19S proteosome subunit 9 [imported] - Arabidopsis th... 221 8e-57
ref|NP_477474.1| Proteasome p44.5 subunit CG10149-PB gi|24653696... 154 9e-37
ref|XP_126260.1| proteasome 26S non-ATPase subunit 11 [Mus muscu... 150 1e-35
gb|AAH30432.1| Unknown (protein for IMAGE:5369772) [Mus musculus] 150 1e-35
>ref|NP_174210.1| 26S proteasome regulatory subunit (RPN6), putative; protein id:
At1g29150.1, supported by cDNA: 39755., supported by
cDNA: gi_15810544, supported by cDNA: gi_3450888
[Arabidopsis thaliana] gi|25332513|pir||A86414
hypothetical protein F28N24.15 - Arabidopsis thaliana
gi|9502423|gb|AAF88122.1|AC021043_15 Similar to 26S
proteasome subunits [Arabidopsis thaliana]
gi|13877881|gb|AAK44018.1|AF370203_1 putative 19S
proteosome subunit 9 [Arabidopsis thaliana]
gi|15810545|gb|AAL07160.1| putative 19S proteosome
subunit 9 [Arabidopsis thaliana]
Length = 419
Score = 229 bits (585), Expect = 2e-59
Identities = 114/130 (87%), Positives = 124/130 (94%)
Frame = -3
Query: 613 HSKRSLKLFETALRNYKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAEL 434
HSKRSLKLFE ALR+YKAQLE+DPIVHRHL SLY TL+EQNLCRLIEPFSRVEIAHIAEL
Sbjct: 290 HSKRSLKLFENALRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAEL 349
Query: 433 IELPLDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPQTDAIYPATLETISNIGKVVDS 254
I LPLDHVE+KLSQMILDKKFAGTLDQGAGCLIIF+DP+ DAIY ATLETI+N+GKVVDS
Sbjct: 350 IGLPLDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKADAIYSATLETIANMGKVVDS 409
Query: 253 LYVRSAQIMA 224
LYVRSA+IM+
Sbjct: 410 LYVRSAKIMS 419
>pir||T52033 19S proteosome subunit 9 [imported] - Arabidopsis thaliana
gi|3450889|gb|AAC34120.1| 19S proteosome subunit 9
[Arabidopsis thaliana]
Length = 421
Score = 221 bits (562), Expect = 8e-57
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = -3
Query: 613 HSKRSLKLFETALRNYKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAEL 434
HSKRSLKLFE ALR+YKAQLE+DPIVHRHL SLY TL+EQNLCRLIEPFSRVEIAHIAEL
Sbjct: 289 HSKRSLKLFENALRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAEL 348
Query: 433 IELPLDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPQTDAIYPATLETISNIGKVVDS 254
I LPLDHVE+KLSQMILDKKFAGTLDQGAGCLIIF+DP+ DAIY ATLETI+N+GKVVDS
Sbjct: 349 IGLPLDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKADAIYSATLETIANMGKVVDS 408
Query: 253 LYVRSAQ 233
LYV Q
Sbjct: 409 LYVPVCQ 415
>ref|NP_477474.1| Proteasome p44.5 subunit CG10149-PB gi|24653696|ref|NP_725412.1|
Proteasome p44.5 subunit CG10149-PA
gi|5679146|gb|AAD46879.1|AF160939_1 BcDNA.LD18931
[Drosophila melanogaster]
gi|6434956|gb|AAF08390.1|AF145309_1 26S proteasome
regulatory complex subunit p42B [Drosophila
melanogaster] gi|7303147|gb|AAF58212.1| CG10149-PB
[Drosophila melanogaster] gi|7303148|gb|AAF58213.1|
CG10149-PA [Drosophila melanogaster]
Length = 422
Score = 154 bits (389), Expect = 9e-37
Identities = 73/126 (57%), Positives = 98/126 (76%)
Frame = -3
Query: 607 KRSLKLFETALRNYKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIE 428
KRSL F+ AL+ YK +L ED IV HL +LY T++EQNLCR+IEP+SRV++AH+AE I+
Sbjct: 296 KRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQ 355
Query: 427 LPLDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPQTDAIYPATLETISNIGKVVDSLY 248
LP+ VE+KLSQMILDKKF+G LDQG G LI+F++ D Y LETI ++GKVVD+LY
Sbjct: 356 LPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLY 415
Query: 247 VRSAQI 230
++ ++
Sbjct: 416 QKAKKL 421
>ref|XP_126260.1| proteasome 26S non-ATPase subunit 11 [Mus musculus]
Length = 324
Score = 150 bits (380), Expect = 1e-35
Identities = 77/125 (61%), Positives = 93/125 (73%)
Frame = -3
Query: 604 RSLKLFETALRNYKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIEL 425
RSL FE AL +Y+A+L +DPI+ HL LY L+EQNL R+IEPFSRV+I HI+ LI+L
Sbjct: 199 RSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKL 258
Query: 424 PLDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPQTDAIYPATLETISNIGKVVDSLYV 245
VERKLSQMILDKKF G LDQG G LIIFD+P D Y A LETI N+ KVVDSLY
Sbjct: 259 SKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYS 318
Query: 244 RSAQI 230
++ ++
Sbjct: 319 KAKKL 323
>gb|AAH30432.1| Unknown (protein for IMAGE:5369772) [Mus musculus]
Length = 323
Score = 150 bits (380), Expect = 1e-35
Identities = 77/125 (61%), Positives = 93/125 (73%)
Frame = -3
Query: 604 RSLKLFETALRNYKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIEL 425
RSL FE AL +Y+A+L +DPI+ HL LY L+EQNL R+IEPFSRV+I HI+ LI+L
Sbjct: 198 RSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKL 257
Query: 424 PLDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPQTDAIYPATLETISNIGKVVDSLYV 245
VERKLSQMILDKKF G LDQG G LIIFD+P D Y A LETI N+ KVVDSLY
Sbjct: 258 SKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYS 317
Query: 244 RSAQI 230
++ ++
Sbjct: 318 KAKKL 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,879,603
Number of Sequences: 1393205
Number of extensions: 11337550
Number of successful extensions: 27984
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 26930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27977
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
