Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001763A_C01 KMC001763A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568462.1| RING finger-like protein; protein id: At5g24870... 127 1e-28
gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana] 127 1e-28
ref|NP_567877.1| putative protein; protein id: At4g31450.1, supp... 126 2e-28
pir||T10675 hypothetical protein F3L17.20 - Arabidopsis thaliana... 126 2e-28
ref|NP_196626.2| Pspzf zinc finger protein - like; protein id: A... 115 3e-25
>ref|NP_568462.1| RING finger-like protein; protein id: At5g24870.1 [Arabidopsis
thaliana]
Length = 552
Score = 127 bits (318), Expect = 1e-28
Identities = 56/91 (61%), Positives = 68/91 (74%)
Frame = -2
Query: 562 LEERMATVSTAVTEEALSECLKKNPYQPSASDNVTCNENKDDIKCSICQEEYVAADEVGS 383
LEE+M TVSTA++EEAL + LK + Y+P+ + C DD+KCSICQEEYV DEVG+
Sbjct: 456 LEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEVGT 515
Query: 382 LKCEHKYHVVCIQQWLRLKNWCPICKAPVAS 290
L C+HKYHV C QQWLR+KNWCPICK S
Sbjct: 516 LPCQHKYHVSCAQQWLRMKNWCPICKTSAES 546
>gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana]
Length = 520
Score = 127 bits (318), Expect = 1e-28
Identities = 56/91 (61%), Positives = 68/91 (74%)
Frame = -2
Query: 562 LEERMATVSTAVTEEALSECLKKNPYQPSASDNVTCNENKDDIKCSICQEEYVAADEVGS 383
LEE+M TVSTA++EEAL + LK + Y+P+ + C DD+KCSICQEEYV DEVG+
Sbjct: 424 LEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEVGT 483
Query: 382 LKCEHKYHVVCIQQWLRLKNWCPICKAPVAS 290
L C+HKYHV C QQWLR+KNWCPICK S
Sbjct: 484 LPCQHKYHVSCAQQWLRMKNWCPICKTSAES 514
>ref|NP_567877.1| putative protein; protein id: At4g31450.1, supported by cDNA:
gi_15983461 [Arabidopsis thaliana]
gi|15983462|gb|AAL11599.1|AF424605_1 AT4g31450/F3L17_20
[Arabidopsis thaliana] gi|25141205|gb|AAN73297.1|
At4g31450/F3L17_20 [Arabidopsis thaliana]
Length = 497
Score = 126 bits (316), Expect = 2e-28
Identities = 59/97 (60%), Positives = 75/97 (76%), Gaps = 4/97 (4%)
Frame = -2
Query: 562 LEERMATVSTAVTEEALSECLKKNPYQ--PSASDNVTCN--ENKDDIKCSICQEEYVAAD 395
LEER+ TVSTA+TEEA+S+CLK + YQ P + ++T + +NK+D KCSICQEEY D
Sbjct: 400 LEERIGTVSTALTEEAISKCLKTSIYQMKPLSYGSITKSPSDNKEDAKCSICQEEYTIGD 459
Query: 394 EVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPVASSS 284
EVG L CEH YHV C+Q+WLR+K+WCPICKA +SS
Sbjct: 460 EVGRLHCEHTYHVKCVQEWLRIKSWCPICKATAETSS 496
>pir||T10675 hypothetical protein F3L17.20 - Arabidopsis thaliana
gi|5262756|emb|CAB45904.1| putative protein [Arabidopsis
thaliana] gi|7270048|emb|CAB79863.1| putative protein
[Arabidopsis thaliana]
Length = 488
Score = 126 bits (316), Expect = 2e-28
Identities = 59/97 (60%), Positives = 75/97 (76%), Gaps = 4/97 (4%)
Frame = -2
Query: 562 LEERMATVSTAVTEEALSECLKKNPYQ--PSASDNVTCN--ENKDDIKCSICQEEYVAAD 395
LEER+ TVSTA+TEEA+S+CLK + YQ P + ++T + +NK+D KCSICQEEY D
Sbjct: 391 LEERIGTVSTALTEEAISKCLKTSIYQMKPLSYGSITKSPSDNKEDAKCSICQEEYTIGD 450
Query: 394 EVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPVASSS 284
EVG L CEH YHV C+Q+WLR+K+WCPICKA +SS
Sbjct: 451 EVGRLHCEHTYHVKCVQEWLRIKSWCPICKATAETSS 487
>ref|NP_196626.2| Pspzf zinc finger protein - like; protein id: At5g10650.1,
supported by cDNA: gi_20466427 [Arabidopsis thaliana]
Length = 525
Score = 115 bits (289), Expect = 3e-25
Identities = 51/86 (59%), Positives = 64/86 (74%)
Frame = -2
Query: 562 LEERMATVSTAVTEEALSECLKKNPYQPSASDNVTCNENKDDIKCSICQEEYVAADEVGS 383
L ++M TVSTA++EEALS LK++ YQ + DDIKCSICQEEYV DE+G+
Sbjct: 431 LGDKMGTVSTALSEEALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGT 490
Query: 382 LKCEHKYHVVCIQQWLRLKNWCPICK 305
+ C+H YHV C+QQWLR+KNWCPICK
Sbjct: 491 IPCQHMYHVSCVQQWLRMKNWCPICK 516
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,538,992
Number of Sequences: 1393205
Number of extensions: 10273130
Number of successful extensions: 29555
Number of sequences better than 10.0: 1180
Number of HSP's better than 10.0 without gapping: 28223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29428
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
