Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001760A_C01 KMC001760A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA72330.1| shaggy-like kinase [Ricinus communis] 65 8e-10
ref|NP_193606.1| shaggy-like protein kinase etha (EC 2.7.1.-); p... 62 5e-09
gb|AAL77705.1| AT4g18710/F28A21_120 [Arabidopsis thaliana] 62 5e-09
sp|Q39011|KSGE_ARATH Shaggy-related protein kinase eta (ASK-eta)... 62 5e-09
dbj|BAA92966.1| unnamed protein product [Oryza sativa (japonica ... 55 1e-06
>emb|CAA72330.1| shaggy-like kinase [Ricinus communis]
Length = 277
Score = 65.1 bits (157), Expect = 8e-10
Identities = 28/35 (80%), Positives = 34/35 (97%)
Frame = -1
Query: 661 LFNFKQEISGASPELVNKLIPDHVKRQIGLQFVHV 557
LFNFKQE++GASPELVNKLIPDH+KRQ+GL F+H+
Sbjct: 240 LFNFKQELNGASPELVNKLIPDHMKRQMGLNFLHL 274
>ref|NP_193606.1| shaggy-like protein kinase etha (EC 2.7.1.-); protein id:
At4g18710.1, supported by cDNA: 256076., supported by
cDNA: gi_18700187 [Arabidopsis thaliana]
gi|7434280|pir||T04863 shaggy-like protein kinase eta
(EC 2.7.1.-) - Arabidopsis thaliana
gi|4539390|emb|CAB37456.1| shaggy-like protein kinase
etha (EC 2.7.1.-) [Arabidopsis thaliana]
gi|7268665|emb|CAB78873.1| shaggy-like protein kinase
etha (EC 2.7.1.-) [Arabidopsis thaliana]
gi|21554512|gb|AAM63594.1| shaggy-like protein kinase
etha (EC 2.7.1.-) [Arabidopsis thaliana]
gi|25140476|gb|AAN71719.1| glycogen synthase kinase 3
beta protein kinase DWARF12 [Arabidopsis thaliana]
Length = 380
Score = 62.4 bits (150), Expect = 5e-09
Identities = 26/34 (76%), Positives = 33/34 (96%)
Frame = -1
Query: 661 LFNFKQEISGASPELVNKLIPDHVKRQIGLQFVH 560
LFNFKQE++G+SPELVNKLIPDH+KRQ+GL F++
Sbjct: 343 LFNFKQEVAGSSPELVNKLIPDHIKRQLGLSFLN 376
>gb|AAL77705.1| AT4g18710/F28A21_120 [Arabidopsis thaliana]
Length = 380
Score = 62.4 bits (150), Expect = 5e-09
Identities = 26/34 (76%), Positives = 33/34 (96%)
Frame = -1
Query: 661 LFNFKQEISGASPELVNKLIPDHVKRQIGLQFVH 560
LFNFKQE++G+SPELVNKLIPDH+KRQ+GL F++
Sbjct: 343 LFNFKQEVAGSSPELVNKLIPDHIKRQLGLSFLN 376
>sp|Q39011|KSGE_ARATH Shaggy-related protein kinase eta (ASK-eta)
gi|1161512|emb|CAA64409.1| shaggy-like kinase etha
[Arabidopsis thaliana] gi|1627516|emb|CAA70144.1|
shaggy-like kinase etha [Arabidopsis thaliana]
Length = 380
Score = 62.4 bits (150), Expect = 5e-09
Identities = 26/34 (76%), Positives = 33/34 (96%)
Frame = -1
Query: 661 LFNFKQEISGASPELVNKLIPDHVKRQIGLQFVH 560
LFNFKQE++G+SPELVNKLIPDH+KRQ+GL F++
Sbjct: 343 LFNFKQEVAGSSPELVNKLIPDHIKRQLGLSFLN 376
>dbj|BAA92966.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 407
Score = 54.7 bits (130), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (84%)
Frame = -1
Query: 661 LFNFKQEISGASPELVNKLIPDHVKRQIGLQFVH 560
LFNFK E++ ASPEL+++LIPDH++RQ GL F H
Sbjct: 371 LFNFKHELASASPELIHRLIPDHIRRQHGLNFAH 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,267,418
Number of Sequences: 1393205
Number of extensions: 13774442
Number of successful extensions: 31620
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 30343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31611
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
