Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001757A_C01 KMC001757A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN76362.1| serpin-like protein [Citrus x paradisi] 105 4e-22
pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx ... 101 7e-21
ref|NP_175202.1| serpin, putative; protein id: At1g47710.1 [Arab... 96 5e-19
emb|CAB52709.1| serpin [Triticum aestivum] 90 3e-17
pir||S65782 serpin - wheat gi|871551|emb|CAA90071.1| serpin [Tri... 89 6e-17
>gb|AAN76362.1| serpin-like protein [Citrus x paradisi]
Length = 389
Score = 105 bits (263), Expect = 4e-22
Identities = 53/75 (70%), Positives = 65/75 (86%)
Frame = -2
Query: 610 LTKMVDSSTVGQGLYVSNIFHKSFIEVNEEGTEAAAASAVTIKLRSLQVLTRVDFVADHP 431
L +MVDS VG+ LYVS+IF KSFIEVNEEGTEAAAASA T+ LRS+ +L ++DFVADHP
Sbjct: 306 LAEMVDSP-VGKNLYVSSIFQKSFIEVNEEGTEAAAASAATVVLRSILLLDKIDFVADHP 364
Query: 430 FLFVIREDLTGTVLF 386
F+F+IRED+TG V+F
Sbjct: 365 FVFMIREDMTGLVMF 379
>pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx [Hordeum
vulgare subsp. vulgare] gi|444778|prf||1908213A protein
Zx
Length = 398
Score = 101 bits (252), Expect = 7e-21
Identities = 54/81 (66%), Positives = 66/81 (80%), Gaps = 1/81 (1%)
Frame = -2
Query: 625 SNDAHLTKMVDSSTVGQGLYVSNIFHKSFIEVNEEGTEAAAASAVTIKLRSLQV-LTRVD 449
S++A L++MVDS + LYVS++FHKSF+EVNEEGTEAAA +A + LRSL V +VD
Sbjct: 308 SSEADLSEMVDSPAA-RSLYVSSVFHKSFVEVNEEGTEAAARTARVVTLRSLPVEPVKVD 366
Query: 448 FVADHPFLFVIREDLTGTVLF 386
FVADHPFLF+IREDLTG VLF
Sbjct: 367 FVADHPFLFLIREDLTGVVLF 387
>ref|NP_175202.1| serpin, putative; protein id: At1g47710.1 [Arabidopsis thaliana]
gi|25405891|pir||H96517 protein T2E6.22 [imported] -
Arabidopsis thaliana gi|5668792|gb|AAD46018.1|AC007519_3
Strong similarity to gb|Z15116 serpin (pazx) from
Hordeum vulgare and is a member of the PF|00079 Serpin
family. ESTs gb|R65473, gb|N38150 and gb|AA712968 come
from this gene. [Arabidopsis thaliana]
gi|9802595|gb|AAF99797.1|AC012463_14 T2E6.22
[Arabidopsis thaliana] gi|27311755|gb|AAO00843.1|
serpin, putative [Arabidopsis thaliana]
Length = 391
Score = 95.5 bits (236), Expect = 5e-19
Identities = 51/81 (62%), Positives = 62/81 (75%), Gaps = 1/81 (1%)
Frame = -2
Query: 625 SNDAHLTKMVDSSTVGQGLYVSNIFHKSFIEVNEEGTEAAAASAVTIKLRSLQV-LTRVD 449
S + LT+MV+S +G+ L VSNIFHK+ IEVNEEGTEAAAASA IKLR L + +D
Sbjct: 302 SGEEGLTEMVESPEMGKNLCVSNIFHKACIEVNEEGTEAAAASAGVIKLRGLLMEEDEID 361
Query: 448 FVADHPFLFVIREDLTGTVLF 386
FVADHPFL V+ E++TG VLF
Sbjct: 362 FVADHPFLLVVTENITGVVLF 382
>emb|CAB52709.1| serpin [Triticum aestivum]
Length = 398
Score = 89.7 bits (221), Expect = 3e-17
Identities = 42/80 (52%), Positives = 64/80 (79%)
Frame = -2
Query: 625 SNDAHLTKMVDSSTVGQGLYVSNIFHKSFIEVNEEGTEAAAASAVTIKLRSLQVLTRVDF 446
SN+A ++MVDS + GL VS++FH++F+EVNE+GTEAAA++A+ + L + + +DF
Sbjct: 309 SNEADFSEMVDSP-MAHGLRVSSVFHQAFVEVNEQGTEAAASTAIKMALLQARPPSVMDF 367
Query: 445 VADHPFLFVIREDLTGTVLF 386
+ADHPFLF++RED++G VLF
Sbjct: 368 IADHPFLFLLREDISGVVLF 387
>pir||S65782 serpin - wheat gi|871551|emb|CAA90071.1| serpin [Triticum aestivum]
Length = 398
Score = 88.6 bits (218), Expect = 6e-17
Identities = 41/79 (51%), Positives = 65/79 (81%)
Frame = -2
Query: 622 NDAHLTKMVDSSTVGQGLYVSNIFHKSFIEVNEEGTEAAAASAVTIKLRSLQVLTRVDFV 443
++A ++MVDS + QGL VS++FH++F+EVNE+GTEAAA++A+ + L+ + + +DF+
Sbjct: 310 DEADFSEMVDS-LMPQGLRVSSVFHQAFVEVNEQGTEAAASTAIKMVLQQARPPSVMDFI 368
Query: 442 ADHPFLFVIREDLTGTVLF 386
ADHPFLF++RED++G VLF
Sbjct: 369 ADHPFLFLVREDISGVVLF 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,134,254
Number of Sequences: 1393205
Number of extensions: 9515270
Number of successful extensions: 20968
Number of sequences better than 10.0: 699
Number of HSP's better than 10.0 without gapping: 20104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20608
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
