Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001756A_C01 KMC001756A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188773.1| unknown protein; protein id: At3g21360.1 [Arabi... 99 3e-20
dbj|BAA99421.1| P0710E05.6 [Oryza sativa (japonica cultivar-group)] 86 3e-16
ref|ZP_00030697.1| hypothetical protein [Burkholderia fungorum] 49 3e-05
gb|ZP_00110272.1| hypothetical protein [Nostoc punctiforme] 48 8e-05
ref|NP_746339.1| syrP protein, putative [Pseudomonas putida KT24... 46 2e-04
>ref|NP_188773.1| unknown protein; protein id: At3g21360.1 [Arabidopsis thaliana]
gi|9294683|dbj|BAB03049.1| syringomycin biosynthesis
enzyme-like protein [Arabidopsis thaliana]
gi|26450615|dbj|BAC42419.1| unknown protein [Arabidopsis
thaliana]
Length = 330
Score = 99.0 bits (245), Expect = 3e-20
Identities = 43/53 (81%), Positives = 50/53 (94%)
Frame = -3
Query: 531 PAEIIYDCLNILEEESVAIPWRKGDVLLLDNWAVLHSRRPFDPPRRVLASLVK 373
PA+I++DCL ILEEE VA+PW++GDVLL+DNWAVLHSRRPFDPPRRVLASL K
Sbjct: 278 PADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330
>dbj|BAA99421.1| P0710E05.6 [Oryza sativa (japonica cultivar-group)]
Length = 365
Score = 85.9 bits (211), Expect = 3e-16
Identities = 37/51 (72%), Positives = 45/51 (87%)
Frame = -3
Query: 531 PAEIIYDCLNILEEESVAIPWRKGDVLLLDNWAVLHSRRPFDPPRRVLASL 379
PA++I C ILEEE VA+PWR+GD+LL+DNWAVLHSRR F+PPRR+LASL
Sbjct: 280 PADVIAGCGEILEEECVAVPWRQGDILLIDNWAVLHSRRSFEPPRRILASL 330
>ref|ZP_00030697.1| hypothetical protein [Burkholderia fungorum]
Length = 340
Score = 49.3 bits (116), Expect = 3e-05
Identities = 18/52 (34%), Positives = 34/52 (64%)
Frame = -3
Query: 528 AEIIYDCLNILEEESVAIPWRKGDVLLLDNWAVLHSRRPFDPPRRVLASLVK 373
A+ + + +L+++ + PW GDVL+LDN H+R PF+ PR+V+ ++ +
Sbjct: 275 ADALAEIRGVLDQQRIVFPWLTGDVLMLDNMLSAHARDPFEGPRKVVVAMAR 326
>gb|ZP_00110272.1| hypothetical protein [Nostoc punctiforme]
Length = 343
Score = 47.8 bits (112), Expect = 8e-05
Identities = 18/41 (43%), Positives = 28/41 (67%)
Frame = -3
Query: 495 EEESVAIPWRKGDVLLLDNWAVLHSRRPFDPPRRVLASLVK 373
++E V W KG VL+LDN +H+R+PF PPR++L + +
Sbjct: 295 QQEMVTFSWEKGHVLMLDNMLSIHARQPFVPPRKILVGMAE 335
>ref|NP_746339.1| syrP protein, putative [Pseudomonas putida KT2440]
gi|24985933|gb|AAN69803.1|AE016619_1 syrP protein,
putative [Pseudomonas putida KT2440]
Length = 327
Score = 46.2 bits (108), Expect = 2e-04
Identities = 17/51 (33%), Positives = 34/51 (66%)
Frame = -3
Query: 525 EIIYDCLNILEEESVAIPWRKGDVLLLDNWAVLHSRRPFDPPRRVLASLVK 373
E++ +L++ +++ PW++ DVL+LDN H+R PF PR+V+ ++ +
Sbjct: 270 EVLERIRAVLDDCAISFPWQENDVLMLDNMLAAHARAPFTGPRKVVVAMAQ 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,136,557
Number of Sequences: 1393205
Number of extensions: 9393098
Number of successful extensions: 21347
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 20682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21333
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
