Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001752A_C01 KMC001752A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51182 actin [imported] - Malva pusilla gi|5230841|gb|AAD41... 117 7e-26
gb|AAF82805.1| actin [Helianthus annuus] 117 7e-26
pir||T51183 actin isoform B [imported] - Mimosa pudica gi|668350... 117 7e-26
gb|AAN40685.1| actin [Stevia rebaudiana] 117 7e-26
pir||T51184 actin [imported] - rape gi|4139264|gb|AAD03741.1| ac... 117 7e-26
>pir||T51182 actin [imported] - Malva pusilla
gi|5230841|gb|AAD41039.1|AF112538_1 actin [Malva
pusilla]
Length = 377
Score = 117 bits (294), Expect = 7e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 545 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 378
LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
>gb|AAF82805.1| actin [Helianthus annuus]
Length = 377
Score = 117 bits (294), Expect = 7e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 545 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 378
LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
>pir||T51183 actin isoform B [imported] - Mimosa pudica
gi|6683504|dbj|BAA89214.1| actin isoform B [Mimosa
pudica]
Length = 377
Score = 117 bits (294), Expect = 7e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 545 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 378
LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
>gb|AAN40685.1| actin [Stevia rebaudiana]
Length = 377
Score = 117 bits (294), Expect = 7e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 545 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 378
LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
>pir||T51184 actin [imported] - rape gi|4139264|gb|AAD03741.1| actin [Brassica
napus]
Length = 377
Score = 117 bits (294), Expect = 7e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 545 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 378
LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,487,161
Number of Sequences: 1393205
Number of extensions: 11000908
Number of successful extensions: 28393
Number of sequences better than 10.0: 1207
Number of HSP's better than 10.0 without gapping: 27396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28344
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
