Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001750A_C01 KMC001750A_c01
(1014 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566732.1| expressed protein; protein id: At3g23600.1, sup... 334 1e-90
ref|NP_566731.1| expressed protein; protein id: At3g23570.1, sup... 306 3e-82
gb|AAN65058.1| Unknown protein [Arabidopsis thaliana] 303 4e-81
dbj|BAB02775.1| contains similarity to endo-1,3-1,4-beta-D-gluca... 236 4e-61
sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase precursor gi|... 159 7e-38
>ref|NP_566732.1| expressed protein; protein id: At3g23600.1, supported by cDNA:
11339., supported by cDNA: gi_17381243, supported by
cDNA: gi_20453364 [Arabidopsis thaliana]
gi|9294516|dbj|BAB02778.1| contains similarity to
endo-1,3-1,4-beta-D-glucanase~gene_id:MDB19.8
[Arabidopsis thaliana] gi|17381244|gb|AAL36041.1|
AT3g23600/MDB19_9 [Arabidopsis thaliana]
gi|20453365|gb|AAM19921.1| AT3g23600/MDB19_9
[Arabidopsis thaliana] gi|21536848|gb|AAM61180.1|
contains similarity to endo-1,3-1,4-beta-D-glucanase
[Arabidopsis thaliana]
Length = 239
Score = 334 bits (857), Expect = 1e-90
Identities = 153/227 (67%), Positives = 191/227 (83%)
Frame = -1
Query: 999 MSGPECCSNPPTLNPTGGAGHVDKIAGVNAYFSGSSHSNLAVLLLSDVFGYEAPNLRNLA 820
MSGP+CC NPPTLNP G+GHV+K+ G++AY SGS+ S L VLL+SD+FG+EAPNLR LA
Sbjct: 1 MSGPQCCENPPTLNPVSGSGHVEKLGGLDAYVSGSAESKLCVLLISDIFGFEAPNLRALA 60
Query: 819 DKVAAAGYYVVVPDLLKGEPLDLGNPDRPFPAWIKDHGPDKGFEDTKPIIEALKSKGVSA 640
DKVAA+G+YVVVPD G+P + N DRP P WIKDHG DKGFE+TKP++E +K+KG++A
Sbjct: 61 DKVAASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGITA 120
Query: 639 IGAVGFCWGAKVVVELAKSRLIQAAVLLHPSFVSLDDIKGVDIPISVLAAEIDTISPPEL 460
IGA G CWGAKVVVEL+K LIQAAVLLHPSFV++DDIKG PI++L AEID +SPP L
Sbjct: 121 IGAAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPAL 180
Query: 459 VKQFEPVLAAKSQVASFVKIFPKVSHGWSVRYHLEDTEAVKEAEEAH 319
+KQFE +L++K +V S+VKI PKVSHGW+VRY++++ EAVK AEEAH
Sbjct: 181 LKQFEEILSSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAH 227
>ref|NP_566731.1| expressed protein; protein id: At3g23570.1, supported by cDNA:
gi_13899072 [Arabidopsis thaliana]
gi|13899073|gb|AAK48958.1|AF370531_1 Unknown protein
[Arabidopsis thaliana]
Length = 239
Score = 306 bits (784), Expect = 3e-82
Identities = 142/227 (62%), Positives = 179/227 (78%)
Frame = -1
Query: 999 MSGPECCSNPPTLNPTGGAGHVDKIAGVNAYFSGSSHSNLAVLLLSDVFGYEAPNLRNLA 820
MSG +C NPP L+PT G+GHV+K+ ++ Y GS+HS LAVLL+ VFGYE PNLR LA
Sbjct: 1 MSGHQCTENPPDLDPTSGSGHVEKLGNLDTYVCGSTHSKLAVLLVPHVFGYETPNLRKLA 60
Query: 819 DKVAAAGYYVVVPDLLKGEPLDLGNPDRPFPAWIKDHGPDKGFEDTKPIIEALKSKGVSA 640
DKVA AG+Y VVPD G+P + N DRPFP W+KDH +KGFE++KPI+EALK+KG+++
Sbjct: 61 DKVAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITS 120
Query: 639 IGAVGFCWGAKVVVELAKSRLIQAAVLLHPSFVSLDDIKGVDIPISVLAAEIDTISPPEL 460
IGA GFCWGAKV VELAK +L+ A VLLHP+ V++DDIK V++PI+VL AEID +SPPEL
Sbjct: 121 IGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPEL 180
Query: 459 VKQFEPVLAAKSQVASFVKIFPKVSHGWSVRYHLEDTEAVKEAEEAH 319
V+QFE +LA+K QV SFVKIFP+ HGW+VRY+ D V+ A EAH
Sbjct: 181 VRQFEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAH 227
>gb|AAN65058.1| Unknown protein [Arabidopsis thaliana]
Length = 239
Score = 303 bits (775), Expect = 4e-81
Identities = 141/227 (62%), Positives = 178/227 (78%)
Frame = -1
Query: 999 MSGPECCSNPPTLNPTGGAGHVDKIAGVNAYFSGSSHSNLAVLLLSDVFGYEAPNLRNLA 820
MS +C NPP L+PT G+GHV+K+ ++ Y GS+HS LAVLL+ VFGYE PNLR LA
Sbjct: 1 MSVHQCTENPPDLDPTSGSGHVEKLGNLDTYVCGSTHSKLAVLLVPHVFGYETPNLRKLA 60
Query: 819 DKVAAAGYYVVVPDLLKGEPLDLGNPDRPFPAWIKDHGPDKGFEDTKPIIEALKSKGVSA 640
DKVA AG+Y VVPD G+P + N DRPFP W+KDH +KGFE++KPI+EALK+KG+++
Sbjct: 61 DKVAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITS 120
Query: 639 IGAVGFCWGAKVVVELAKSRLIQAAVLLHPSFVSLDDIKGVDIPISVLAAEIDTISPPEL 460
IGA GFCWGAKV VELAK +L+ A VLLHP+ V++DDIK V++PI+VL AEID +SPPEL
Sbjct: 121 IGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPEL 180
Query: 459 VKQFEPVLAAKSQVASFVKIFPKVSHGWSVRYHLEDTEAVKEAEEAH 319
V+QFE +LA+K QV SFVKIFP+ HGW+VRY+ D V+ A EAH
Sbjct: 181 VRQFEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAH 227
>dbj|BAB02775.1| contains similarity to
endo-1,3-1,4-beta-D-glucanase~gene_id:MDB19.5
[Arabidopsis thaliana]
Length = 232
Score = 236 bits (602), Expect = 4e-61
Identities = 120/221 (54%), Positives = 154/221 (69%), Gaps = 2/221 (0%)
Frame = -1
Query: 975 NPPTLNPTGGAGHVDKIAGVNAYFSGSSHSNL--AVLLLSDVFGYEAPNLRNLADKVAAA 802
N TL PT + + +F S+L +L GY + R LADKVA A
Sbjct: 4 NSVTLTPTSVVPLIQSLL----FFLSLMFSSLERCFILAVTCHGYCSSLDRKLADKVAEA 59
Query: 801 GYYVVVPDLLKGEPLDLGNPDRPFPAWIKDHGPDKGFEDTKPIIEALKSKGVSAIGAVGF 622
G+Y VVPD G+P + N DRPFP W+KDH +KGFE++KPI+EALK+KG+++IGA GF
Sbjct: 60 GFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITSIGAAGF 119
Query: 621 CWGAKVVVELAKSRLIQAAVLLHPSFVSLDDIKGVDIPISVLAAEIDTISPPELVKQFEP 442
CWGAKV VELAK +L+ A VLLHP+ V++DDIK V++PI+VL AEID +SPPELV+QFE
Sbjct: 120 CWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPELVRQFED 179
Query: 441 VLAAKSQVASFVKIFPKVSHGWSVRYHLEDTEAVKEAEEAH 319
+LA+K QV SFVKIFP+ HGW+VRY+ D V+ A EAH
Sbjct: 180 ILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAH 220
>sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase precursor gi|3822036|gb|AAC69757.1|
endo-1,3-1,4-beta-D-glucanase [Zea mays]
Length = 303
Score = 159 bits (402), Expect = 7e-38
Identities = 90/196 (45%), Positives = 121/196 (60%), Gaps = 6/196 (3%)
Frame = -1
Query: 987 ECCSNPPTLNPTGG----AGHV--DKIAGVNAYFSGSSHSNLAVLLLSDVFGYEAPNLRN 826
+C NPP + G AG V D G+ AY SG++ S+ AV+L SDVFGYEAP LR
Sbjct: 28 QCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQ 87
Query: 825 LADKVAAAGYYVVVPDLLKGEPLDLGNPDRPFPAWIKDHGPDKGFEDTKPIIEALKSKGV 646
+ DKVA AGY+VVVPD LKG+ LD + F W++ H P K ED KP+ ALK +G
Sbjct: 88 IVDKVAKAGYFVVVPDFLKGDYLD---DKKNFTEWLEAHSPVKAAEDAKPLFAALKKEGK 144
Query: 645 SAIGAVGFCWGAKVVVELAKSRLIQAAVLLHPSFVSLDDIKGVDIPISVLAAEIDTISPP 466
S + G+CWG K+ VE+ K+ ++A L HP V+ DD+K V PI +L A+ DT +PP
Sbjct: 145 S-VAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPP 203
Query: 465 ELVKQFEPVLAAKSQV 418
+ V +F VL + +V
Sbjct: 204 KEVYRFVHVLRERHEV 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 937,332,903
Number of Sequences: 1393205
Number of extensions: 22418762
Number of successful extensions: 92185
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 78602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91154
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 58773479151
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
