Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001749A_C01 KMC001749A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568029.1| formamidase - like protein; protein id: At4g375... 268 2e-87
gb|AAK59505.1| putative formamidase [Arabidopsis thaliana] 268 2e-87
dbj|BAB63595.1| putative formamidase [Oryza sativa (japonica cul... 258 6e-86
ref|NP_568028.1| formamidase - like protein; protein id: At4g375... 260 6e-86
gb|AAM64380.1| formamidase-like protein [Arabidopsis thaliana] 260 6e-86
>ref|NP_568029.1| formamidase - like protein; protein id: At4g37560.1, supported by
cDNA: gi_14334653 [Arabidopsis thaliana]
gi|23297225|gb|AAN12921.1| putative formamidase
[Arabidopsis thaliana]
Length = 452
Score = 268 bits (684), Expect(2) = 2e-87
Identities = 125/164 (76%), Positives = 142/164 (86%)
Frame = +3
Query: 204 WTSGGGAITTNPTADDVKYLDCSVVHNLTGPIRVVDKDGIPAKAGDLLAVEICNLGPLPG 383
WT GGA+ + +A D+K +D S VH L+GPI+VVD+DG+ A+ GDLLAVEICNLGPLPG
Sbjct: 52 WT--GGAVKEDGSAGDIKSIDLSTVHYLSGPIKVVDEDGVAARPGDLLAVEICNLGPLPG 109
Query: 384 DEWGFTATHDRENGGSFLTDHFPYATKAIWYWEGIYAHSPQIPGVRFPGITHPGIIGTAP 563
DEWGFTA+ DRENGG FLTDHFP ATKAIWY+EGIYA+SPQIPGVRFPG+THPGIIGTAP
Sbjct: 110 DEWGFTASFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPQIPGVRFPGLTHPGIIGTAP 169
Query: 564 SKELLDIWNERERDVAENGVESLKLCEVLHSRPLANLPTTKSCL 695
SKELL IWNERER + E GVESL LCEV+H RPLA+LPTTK CL
Sbjct: 170 SKELLRIWNERERQLEEKGVESLTLCEVVHQRPLASLPTTKGCL 213
Score = 77.4 bits (189), Expect(2) = 2e-87
Identities = 32/44 (72%), Positives = 38/44 (85%)
Frame = +2
Query: 80 VVSIDLKKKPWEQKYPLHNRWHPDIPPVAEAKEGELFRVEMMDF 211
VV +DLKK+PW+Q PLHNRWHP+IP VAE K GELFRVEM+D+
Sbjct: 9 VVKVDLKKRPWQQTQPLHNRWHPEIPSVAEVKTGELFRVEMVDW 52
>gb|AAK59505.1| putative formamidase [Arabidopsis thaliana]
Length = 452
Score = 268 bits (684), Expect(2) = 2e-87
Identities = 125/164 (76%), Positives = 142/164 (86%)
Frame = +3
Query: 204 WTSGGGAITTNPTADDVKYLDCSVVHNLTGPIRVVDKDGIPAKAGDLLAVEICNLGPLPG 383
WT GGA+ + +A D+K +D S VH L+GPI+VVD+DG+ A+ GDLLAVEICNLGPLPG
Sbjct: 52 WT--GGAVKEDGSAGDIKSIDLSTVHYLSGPIKVVDEDGVAARPGDLLAVEICNLGPLPG 109
Query: 384 DEWGFTATHDRENGGSFLTDHFPYATKAIWYWEGIYAHSPQIPGVRFPGITHPGIIGTAP 563
DEWGFTA+ DRENGG FLTDHFP ATKAIWY+EGIYA+SPQIPGVRFPG+THPGIIGTAP
Sbjct: 110 DEWGFTASFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPQIPGVRFPGLTHPGIIGTAP 169
Query: 564 SKELLDIWNERERDVAENGVESLKLCEVLHSRPLANLPTTKSCL 695
SKELL IWNERER + E GVESL LCEV+H RPLA+LPTTK CL
Sbjct: 170 SKELLRIWNERERQLEEKGVESLTLCEVVHQRPLASLPTTKGCL 213
Score = 77.4 bits (189), Expect(2) = 2e-87
Identities = 32/44 (72%), Positives = 38/44 (85%)
Frame = +2
Query: 80 VVSIDLKKKPWEQKYPLHNRWHPDIPPVAEAKEGELFRVEMMDF 211
VV +DLKK+PW+Q PLHNRWHP+IP VAE K GELFRVEM+D+
Sbjct: 9 VVKVDLKKRPWQQTQPLHNRWHPEIPSVAEVKTGELFRVEMVDW 52
>dbj|BAB63595.1| putative formamidase [Oryza sativa (japonica cultivar-group)]
Length = 454
Score = 258 bits (658), Expect(2) = 6e-86
Identities = 115/164 (70%), Positives = 141/164 (85%)
Frame = +3
Query: 204 WTSGGGAITTNPTADDVKYLDCSVVHNLTGPIRVVDKDGIPAKAGDLLAVEICNLGPLPG 383
WT GG ++ + +ADD+K+LD ++ H L+GP+R+VD +G+PA GDLLAVEICNLGPLPG
Sbjct: 52 WT--GGRVSDDNSADDIKFLDLTITHYLSGPLRIVDAEGVPAAPGDLLAVEICNLGPLPG 109
Query: 384 DEWGFTATHDRENGGSFLTDHFPYATKAIWYWEGIYAHSPQIPGVRFPGITHPGIIGTAP 563
DEWG+TA +RENGG FLTDHFP A KAIWY+EGIYA+SPQIPGVRFPG+THPGI+GTAP
Sbjct: 110 DEWGYTAIFERENGGGFLTDHFPSARKAIWYFEGIYAYSPQIPGVRFPGLTHPGIVGTAP 169
Query: 564 SKELLDIWNERERDVAENGVESLKLCEVLHSRPLANLPTTKSCL 695
S ELL+IWNERE+ +AE ES+K+CEVLH RPLANLPT ++CL
Sbjct: 170 SAELLNIWNEREKILAETNHESIKICEVLHQRPLANLPTPENCL 213
Score = 82.4 bits (202), Expect(2) = 6e-86
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +2
Query: 80 VVSIDLKKKPWEQKYPLHNRWHPDIPPVAEAKEGELFRVEMMDF 211
VV ID+ KKPWEQK PLHNRWHPDIPPVA+ EGELFRVEM+D+
Sbjct: 9 VVPIDVSKKPWEQKVPLHNRWHPDIPPVADVTEGELFRVEMVDW 52
>ref|NP_568028.1| formamidase - like protein; protein id: At4g37550.1, supported by
cDNA: 23732. [Arabidopsis thaliana]
Length = 452
Score = 260 bits (665), Expect(2) = 6e-86
Identities = 120/160 (75%), Positives = 137/160 (85%)
Frame = +3
Query: 216 GGAITTNPTADDVKYLDCSVVHNLTGPIRVVDKDGIPAKAGDLLAVEICNLGPLPGDEWG 395
GG I N +A D+K L + H+L+GPIRVVD++G+ AKAGDLLAVEICNLGPLPGDEWG
Sbjct: 54 GGVIKDNDSASDIKNLVLTTTHHLSGPIRVVDEEGVAAKAGDLLAVEICNLGPLPGDEWG 113
Query: 396 FTATHDRENGGSFLTDHFPYATKAIWYWEGIYAHSPQIPGVRFPGITHPGIIGTAPSKEL 575
FT + DRENGG FLTDHFP ATKAIWY+EGIYA+SPQIPGVRFPG+THPG+IGTAPS EL
Sbjct: 114 FTGSFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPQIPGVRFPGLTHPGVIGTAPSNEL 173
Query: 576 LDIWNERERDVAENGVESLKLCEVLHSRPLANLPTTKSCL 695
L IWN+RER + E+GVESL LCEV+H RPLA LPTTK CL
Sbjct: 174 LRIWNDRERQLEESGVESLTLCEVVHQRPLACLPTTKGCL 213
Score = 79.7 bits (195), Expect(2) = 6e-86
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = +2
Query: 80 VVSIDLKKKPWEQKYPLHNRWHPDIPPVAEAKEGELFRVEMMD 208
VV +DLKKKPW+Q PLHNRWHP+IPPVAE K GE FRVEM+D
Sbjct: 9 VVKVDLKKKPWQQDQPLHNRWHPEIPPVAEVKAGEFFRVEMID 51
>gb|AAM64380.1| formamidase-like protein [Arabidopsis thaliana]
Length = 452
Score = 260 bits (665), Expect(2) = 6e-86
Identities = 120/160 (75%), Positives = 137/160 (85%)
Frame = +3
Query: 216 GGAITTNPTADDVKYLDCSVVHNLTGPIRVVDKDGIPAKAGDLLAVEICNLGPLPGDEWG 395
GG I N +A D+K L + H+L+GPIRVVD++G+ AKAGDLLAVEICNLGPLPGDEWG
Sbjct: 54 GGVIKDNDSASDIKNLVLTTTHHLSGPIRVVDEEGVAAKAGDLLAVEICNLGPLPGDEWG 113
Query: 396 FTATHDRENGGSFLTDHFPYATKAIWYWEGIYAHSPQIPGVRFPGITHPGIIGTAPSKEL 575
FT + DRENGG FLTDHFP ATKAIWY+EGIYA+SPQIPGVRFPG+THPG+IGTAPS EL
Sbjct: 114 FTGSFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPQIPGVRFPGLTHPGVIGTAPSNEL 173
Query: 576 LDIWNERERDVAENGVESLKLCEVLHSRPLANLPTTKSCL 695
L IWN+RER + E+GVESL LCEV+H RPLA LPTTK CL
Sbjct: 174 LRIWNDRERQLEESGVESLTLCEVVHQRPLACLPTTKGCL 213
Score = 79.7 bits (195), Expect(2) = 6e-86
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = +2
Query: 80 VVSIDLKKKPWEQKYPLHNRWHPDIPPVAEAKEGELFRVEMMD 208
VV +DLKKKPW+Q PLHNRWHP+IPPVAE K GE FRVEM+D
Sbjct: 9 VVKVDLKKKPWQQDQPLHNRWHPEIPPVAEVKAGEFFRVEMID 51
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,030,697
Number of Sequences: 1393205
Number of extensions: 17223364
Number of successful extensions: 49001
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 46676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48952
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
