Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001748A_C02 KMC001748A_c02
(787 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193391.1| hypothetical protein; protein id: At4g16580.1 [... 160 1e-38
dbj|BAC42578.1| unknown protein [Arabidopsis thaliana] gi|289508... 160 1e-38
ref|NP_201473.1| putative protein; protein id: At5g66720.1 [Arab... 143 3e-33
ref|NP_567923.1| putative protein; protein id: At4g33500.1, supp... 82 7e-15
pir||T06001 hypothetical protein F17M5.260 - Arabidopsis thalian... 81 2e-14
>ref|NP_193391.1| hypothetical protein; protein id: At4g16580.1 [Arabidopsis
thaliana] gi|25366932|pir||E85184 hypothetical protein
dl4315c [imported] - Arabidopsis thaliana
gi|5302796|emb|CAB46038.1| hypothetical protein
[Arabidopsis thaliana] gi|7268408|emb|CAB78700.1|
hypothetical protein [Arabidopsis thaliana]
Length = 335
Score = 160 bits (406), Expect = 1e-38
Identities = 78/109 (71%), Positives = 91/109 (82%)
Frame = -2
Query: 783 GNEGDLPSSGEVFTLPVAPGDVIVAGTDGLFDNLHNDEITAVVEHAAKMGLEPHMTAQKI 604
G GDLPSSG+VFT+ VAPGDVI+AGTDGLFDNL+N+EITA+V HA + ++P +TAQKI
Sbjct: 224 GRNGDLPSSGQVFTVAVAPGDVIIAGTDGLFDNLYNNEITAIVVHAVRANIDPQVTAQKI 283
Query: 603 AALARERALDKFGQTPFSTAAQKVGFPYYGGKLDDLTVVVSYIPNSTSE 457
AALAR+RA DK QTPFSTAAQ GF YYGGKLDD+TVVVSY+ S E
Sbjct: 284 AALARQRAQDKNRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVAASKEE 332
>dbj|BAC42578.1| unknown protein [Arabidopsis thaliana] gi|28950865|gb|AAO63356.1|
At4g16580 [Arabidopsis thaliana]
Length = 300
Score = 160 bits (406), Expect = 1e-38
Identities = 78/109 (71%), Positives = 91/109 (82%)
Frame = -2
Query: 783 GNEGDLPSSGEVFTLPVAPGDVIVAGTDGLFDNLHNDEITAVVEHAAKMGLEPHMTAQKI 604
G GDLPSSG+VFT+ VAPGDVI+AGTDGLFDNL+N+EITA+V HA + ++P +TAQKI
Sbjct: 189 GRNGDLPSSGQVFTVAVAPGDVIIAGTDGLFDNLYNNEITAIVVHAVRANIDPQVTAQKI 248
Query: 603 AALARERALDKFGQTPFSTAAQKVGFPYYGGKLDDLTVVVSYIPNSTSE 457
AALAR+RA DK QTPFSTAAQ GF YYGGKLDD+TVVVSY+ S E
Sbjct: 249 AALARQRAQDKNRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVAASKEE 297
>ref|NP_201473.1| putative protein; protein id: At5g66720.1 [Arabidopsis thaliana]
gi|8843730|dbj|BAA97278.1| contains similarity to
unknown protein~emb|CAB46038.1~gene_id:MSN2.11
[Arabidopsis thaliana] gi|22531134|gb|AAM97071.1|
putative protein [Arabidopsis thaliana]
gi|23198040|gb|AAN15547.1| putative protein [Arabidopsis
thaliana] gi|26449356|dbj|BAC41805.1| unknown protein
[Arabidopsis thaliana]
Length = 414
Score = 143 bits (360), Expect = 3e-33
Identities = 68/106 (64%), Positives = 87/106 (81%)
Frame = -2
Query: 783 GNEGDLPSSGEVFTLPVAPGDVIVAGTDGLFDNLHNDEITAVVEHAAKMGLEPHMTAQKI 604
GN D+PSSG+VFT+ V GDVIVAGTDG++DNL+N+EIT VV + + GL+P TAQKI
Sbjct: 309 GNSADVPSSGQVFTIDVQSGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQKI 368
Query: 603 AALARERALDKFGQTPFSTAAQKVGFPYYGGKLDDLTVVVSYIPNS 466
A LAR+RA+DK Q+PF+TAAQ+ G+ YYGGKLDD+T VVSY+ +S
Sbjct: 369 AELARQRAVDKKRQSPFATAAQEAGYRYYGGKLDDITAVVSYVTSS 414
>ref|NP_567923.1| putative protein; protein id: At4g33500.1, supported by cDNA:
gi_15293236 [Arabidopsis thaliana]
gi|14334748|gb|AAK59552.1| unknown protein [Arabidopsis
thaliana] gi|15293237|gb|AAK93729.1| unknown protein
[Arabidopsis thaliana]
Length = 724
Score = 82.4 bits (202), Expect = 7e-15
Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = -2
Query: 771 DLPSSGEVFTLPVAPGDVIVAGTDGLFDNLHNDEITAVVEHAAKMGLEPHMTAQKIAALA 592
D+ EV+ + + GDV++A TDGLFDNL+ EI ++V + K LEP A+ +AA A
Sbjct: 620 DVLKLAEVYHVNLEEGDVVIAATDGLFDNLYEKEIVSIVCGSLKQSLEPQKIAELVAAKA 679
Query: 591 RERALDKFGQTPFSTAAQKVGF-PYYGGKLDDLTVVVSYI 475
+E K +TPF+ AA++ G+ + GGKLD +TV++S++
Sbjct: 680 QEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVIISFV 719
>pir||T06001 hypothetical protein F17M5.260 - Arabidopsis thaliana
gi|4490317|emb|CAB38808.1| putative protein [Arabidopsis
thaliana] gi|7270298|emb|CAB80067.1| putative protein
[Arabidopsis thaliana]
Length = 1066
Score = 81.3 bits (199), Expect = 2e-14
Identities = 42/99 (42%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = -2
Query: 771 DLPSSGEVFTLPVAPGDVIVAGTDGLFDNLHNDEITAVVEHAAKMGLEPHMTAQKIAALA 592
D+ EV+ + + GDV++A TDGLFDNL+ EI ++V + K LEP A+ +AA A
Sbjct: 603 DVLKLAEVYHVNLEEGDVVIAATDGLFDNLYEKEIVSIVCGSLKQSLEPQKIAELVAAKA 662
Query: 591 RERALDKFGQTPFSTAAQKVGF-PYYGGKLDDLTVVVSY 478
+E K +TPF+ AA++ G+ + GGKLD +TV++S+
Sbjct: 663 QEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVIISF 701
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,040,353
Number of Sequences: 1393205
Number of extensions: 13019688
Number of successful extensions: 37798
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 35157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37419
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39215601880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
