Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001745A_C01 KMC001745A_c01
(422 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum] 71 3e-12
gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis ... 70 6e-12
ref|NP_181045.1| putative RING zinc finger protein; protein id: ... 67 7e-11
ref|NP_192651.1| putative protein; protein id: At4g09120.1 [Arab... 62 2e-09
ref|NP_192652.1| putative protein; protein id: At4g09130.1 [Arab... 58 3e-08
>dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum]
Length = 154
Score = 71.2 bits (173), Expect = 3e-12
Identities = 48/106 (45%), Positives = 60/106 (56%), Gaps = 15/106 (14%)
Frame = -3
Query: 417 RSHSTGHSL---GEDWERFTLRLPEEVRNRLVN-STLNRTTSCGATFMRVSSGRSGYRA- 253
RSHSTGHSL GE+ +R+TLRLPE+VR +++ + LNRT SC T R S GYRA
Sbjct: 3 RSHSTGHSLVVPGENLDRYTLRLPEKVRKDVMDRALLNRTRSCAVTLPRHGSTTRGYRAG 62
Query: 252 ---------RSVGRSPIGGSDERSDRRFF-WTPPFVSRAGSTRSPK 145
RS R + +SDR F PPF +R S +SPK
Sbjct: 63 PGEGSNRGTRSFKRIDRFDPEAKSDRWFLKIAPPFFTRGSSMKSPK 108
>gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis melo]
Length = 379
Score = 70.1 bits (170), Expect = 6e-12
Identities = 47/105 (44%), Positives = 56/105 (52%), Gaps = 13/105 (12%)
Frame = -3
Query: 420 PRSHSTGHSL---GEDWERFTLRLPEEVRNRLVNSTLNRTTSCGATFMRVSSGRSGYRAR 250
PRSHSTGHSL GED ERFTLRLP E+R ++VN L+R TS R SS GYR
Sbjct: 248 PRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLHRATSM-VVLARQSSSMRGYRFG 306
Query: 249 SVGRSPIGGSDERSDRR----------FFWTPPFVSRAGSTRSPK 145
S S G R +R TPPF +R S ++P+
Sbjct: 307 SGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPR 351
>ref|NP_181045.1| putative RING zinc finger protein; protein id: At2g35000.1
[Arabidopsis thaliana] gi|7485807|pir||T00481 probable
RING zinc finger protein [imported] - Arabidopsis
thaliana gi|3033395|gb|AAC12839.1| putative RING zinc
finger protein [Arabidopsis thaliana]
Length = 378
Score = 66.6 bits (161), Expect = 7e-11
Identities = 50/122 (40%), Positives = 67/122 (53%), Gaps = 14/122 (11%)
Frame = -3
Query: 420 PRSHSTGHSLGE---DWERFTLRLPEEVRNRLVNSTLNRTTSCGATFMRVSSGRSGYRAR 250
PRSHSTGHSL + + +RFTLRLP++VR +L+ + +RT A + S RSGYR+
Sbjct: 253 PRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQLMKT--SRTMGHVALLPQARSSRSGYRSG 310
Query: 249 SVGRS----PIGGSDERSDRRFF-WTPPFVSRAGSTRS------PKPNKAMDDMGERSSD 103
SVG P G ++RR + F R+GS RS PK + GERS +
Sbjct: 311 SVGSERSAFPYGRKSNNNNRRLHSLSFSFSFRSGSVRSTFSGDAPKNLPTSIEAGERSFE 370
Query: 102 RL 97
RL
Sbjct: 371 RL 372
>ref|NP_192651.1| putative protein; protein id: At4g09120.1 [Arabidopsis thaliana]
gi|25407484|pir||D85092 hypothetical protein AT4g09120
[imported] - Arabidopsis thaliana
gi|7267555|emb|CAB78036.1| putative protein [Arabidopsis
thaliana]
Length = 345
Score = 62.0 bits (149), Expect = 2e-09
Identities = 49/120 (40%), Positives = 63/120 (51%), Gaps = 12/120 (10%)
Frame = -3
Query: 420 PRSHSTGHSL----GEDWERFTLRLPEEVRNRLVNSTLNRTTSCGATFMRVSSGRSGYRA 253
PRSHSTGHSL GE+ +RFTL+LPEEV+ +LV+ L R + + S R GYR+
Sbjct: 223 PRSHSTGHSLVQQLGENLDRFTLQLPEEVQRQLVSLNLIRRSH--IVLPQAVSSRQGYRS 280
Query: 252 RSVGRSPIGGSDERSDRRFFWTPPFVSRAGSTRSPKPNKAMDD--------MGERSSDRL 97
SVG G S R R + F S + T S + M+D GERS +RL
Sbjct: 281 GSVGSERGGFSQGRQTHRRALSMSF-SFSFQTASVRSIHDMNDQAQAKDKYFGERSFERL 339
>ref|NP_192652.1| putative protein; protein id: At4g09130.1 [Arabidopsis thaliana]
gi|25407486|pir||E85092 hypothetical protein AT4g09130
[imported] - Arabidopsis thaliana
gi|7267556|emb|CAB78037.1| putative protein [Arabidopsis
thaliana]
Length = 357
Score = 57.8 bits (138), Expect = 3e-08
Identities = 49/122 (40%), Positives = 61/122 (49%), Gaps = 14/122 (11%)
Frame = -3
Query: 420 PRSHSTGHSLGE---DWERFTLRLPEEVRNRLVNSTLNRTTSCGATFMRVSSGRSGYRAR 250
PRSHSTGHSL + + +RFTL+LPEEV+ +LV +LN R S R GYR+
Sbjct: 233 PRSHSTGHSLVQPCQNIDRFTLQLPEEVQRQLV--SLNLIKRSHIALPRARSSRQGYRSG 290
Query: 249 SVGRSPIGGSDERSDRR-------FFWTPPFVSRAGSTRS---PKPNKAMD-DMGERSSD 103
SVG G S R R F P R+ R + ++A D D GERS
Sbjct: 291 SVGNERTGFSQGRQTLRRAISTSLSFSFQPAPVRSTLDRDNLMRETSQANDKDFGERSFQ 350
Query: 102 RL 97
RL
Sbjct: 351 RL 352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,836,555
Number of Sequences: 1393205
Number of extensions: 9076587
Number of successful extensions: 30297
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 27212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29888
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
