Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001742A_C01 KMC001742A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198135.1| putative protein; protein id: At5g27830.1, supp... 71 7e-15
ref|NP_521672.1| HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia s... 37 0.22
gb|AAL65133.2| ovarian cancer related tumor marker CA125 [Homo s... 32 4.1
ref|XP_165190.1| hypothetical protein XP_165190 [Mus musculus] 32 7.0
>ref|NP_198135.1| putative protein; protein id: At5g27830.1, supported by cDNA:
gi_14532675 [Arabidopsis thaliana]
gi|14532676|gb|AAK64139.1| unknown protein [Arabidopsis
thaliana] gi|24030466|gb|AAN41385.1| unknown protein
[Arabidopsis thaliana]
Length = 300
Score = 71.2 bits (173), Expect(2) = 7e-15
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 560 VCGRAAEWASNGTDLCAAAGFRVKPSDIVHIPSEETYCYGDKASLGSVSDSW-KASQSEL 384
+C +A+ W SNGT C AAGF V+ +D S E CYG KASL SV +SW + S+ E
Sbjct: 163 ICIKASNWESNGTSFCEAAGFAVQRND----DSREKPCYGSKASLESVVESWSRDSRKET 218
Query: 383 ARKGENLRKFDDFQLWFMDMPLSERVLWAIGGMVLTAGLVLHKQ 252
K E L F D W +M +++ ++G L AG+ L +Q
Sbjct: 219 PLKTETLSCFKDLLQWVREMTTIQKI--SLGMSFLIAGMFLIRQ 260
Score = 30.4 bits (67), Expect(2) = 7e-15
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -1
Query: 259 ISKRKSHNQRQKLAAIKRAARKLEG 185
I + + NQ+Q+LAAI+R AR+L G
Sbjct: 258 IRQSNNRNQKQRLAAIQRTARRLRG 282
>ref|NP_521672.1| HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
gi|17430578|emb|CAD17262.1| HYPOTHETICAL TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 681
Score = 36.6 bits (83), Expect = 0.22
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 308 VLWAIGGMVLTAGLVLHKQKEKPQPTPETSSYKARCEEARRPGC 177
VLW + + L A L L Q+ +P+P P + ++ C+ R GC
Sbjct: 572 VLWGVSALFLLAALPLLWQQRRPRPDPVQAQWQRVCDRLARHGC 615
>gb|AAL65133.2| ovarian cancer related tumor marker CA125 [Homo sapiens]
Length = 22152
Score = 32.3 bits (72), Expect = 4.1
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Frame = +1
Query: 277 VRTIPPIAHKTLSLNGISMNHSWKSSNFLRFSPFRANSDCEAFQESDTEPRLALSP*QYV 456
+RT+P T++ SW + +P + + D P +A SP
Sbjct: 11678 IRTVPSSEPDTMA--------SWVTHPPQTSTPVSRTTSSFSHSSPDATPVMATSPRTEA 11729
Query: 457 SSEGICTISDG--------FTRKPAAAQRSVPLEAHSAALPHT 561
SS + TIS G T AA +VP HS +P T
Sbjct: 11730 SSAVLTTISPGAPEMVTSQITSSGAATSTTVPTLTHSPGMPET 11772
>ref|XP_165190.1| hypothetical protein XP_165190 [Mus musculus]
Length = 362
Score = 31.6 bits (70), Expect = 7.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Frame = -3
Query: 251 KEKPQPTPETSSYKARCEEARRPGCQ----------A*WRNQGFLML*KIGKEFPDECSL 102
+E+ Q T E +++ RCE RRP CQ + ++N FL+ +G E L
Sbjct: 52 EERTQQTDEKTAHVLRCEAQRRPPCQITGGKKAEKSSRFQND-FLIQVPLGSRMSAEEIL 110
Query: 101 VCVIVNIINFFL 66
+ + NI+ F+
Sbjct: 111 IKIFANILKAFV 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,165,522
Number of Sequences: 1393205
Number of extensions: 10205150
Number of successful extensions: 26952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26944
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
