Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001741A_C02 KMC001741A_c02
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180328.1| putative ATPase; protein id: At2g27600.1, suppo... 193 1e-48
gb|AAF21428.1|AF165422_1 suppressor of K+ transport growth defec... 190 2e-47
gb|AAM65285.1| putative ATPase [Arabidopsis thaliana] 189 3e-47
gb|AAL16668.1|AF419850_1 suppressor of K+ transport growth defec... 184 7e-46
dbj|BAB16447.1| putative AAA-type ATPase [Oryza sativa (japonica... 142 5e-33
>ref|NP_180328.1| putative ATPase; protein id: At2g27600.1, supported by cDNA: 3818.,
supported by cDNA: gi_13605796, supported by cDNA:
gi_20147132 [Arabidopsis thaliana]
gi|25407909|pir||F84674 probable AAA-type ATPase
[imported] - Arabidopsis thaliana
gi|3860272|gb|AAC73040.1| putative ATPase [Arabidopsis
thaliana] gi|13605797|gb|AAK32884.1|AF367297_1
F10A12.27/F10A12.27 [Arabidopsis thaliana]
gi|20147133|gb|AAM10283.1| F10A12.27/F10A12.27
[Arabidopsis thaliana] gi|20197659|gb|AAM15184.1|
putative ATPase [Arabidopsis thaliana]
Length = 435
Score = 193 bits (491), Expect = 1e-48
Identities = 90/109 (82%), Positives = 101/109 (92%)
Frame = -3
Query: 633 LARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMPDL 454
L +KTEGFSGSD+SVCVKDVLFEPVRKTQDAMFFFKSP+G W+PCGP+ GAIQ TM DL
Sbjct: 327 LGQKTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKSPDGTWMPCGPRHPGAIQTTMQDL 386
Query: 453 ATKGLASQILPPPISRTDFDKVLARPRPTVSKSDLEVHERFTKEFGEEG 307
ATKGLA +I+PPPI+RTDF+KVLAR RPTVSKSDL+VHERFT+EFGEEG
Sbjct: 387 ATKGLAEKIIPPPITRTDFEKVLARQRPTVSKSDLDVHERFTQEFGEEG 435
>gb|AAF21428.1|AF165422_1 suppressor of K+ transport growth defect-like protein
[Mesembryanthemum crystallinum]
Length = 317
Score = 190 bits (482), Expect = 2e-47
Identities = 88/109 (80%), Positives = 102/109 (92%)
Frame = -3
Query: 633 LARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMPDL 454
LARK EGFSGSDI+VCVKDVLFEPVRKTQDAMFF+K+ + +W+PCGP+Q GA+QITM DL
Sbjct: 209 LARKAEGFSGSDIAVCVKDVLFEPVRKTQDAMFFYKTSDDVWVPCGPRQPGAVQITMQDL 268
Query: 453 ATKGLASQILPPPISRTDFDKVLARPRPTVSKSDLEVHERFTKEFGEEG 307
A KGLA++I+PPPI+RTDF+KVLAR RPTVSKSDLEVHERFT+EFGEEG
Sbjct: 269 AAKGLAAKIVPPPIARTDFEKVLARQRPTVSKSDLEVHERFTQEFGEEG 317
>gb|AAM65285.1| putative ATPase [Arabidopsis thaliana]
Length = 434
Score = 189 bits (480), Expect = 3e-47
Identities = 90/109 (82%), Positives = 101/109 (92%)
Frame = -3
Query: 633 LARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMPDL 454
L +KTEGFSGSD+SVCVKDVLFEPVRKTQDAMFFFKSP+G W+PCGP+ GAIQ TM DL
Sbjct: 327 LGQKTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKSPDGTWMPCGPRHPGAIQTTMQDL 386
Query: 453 ATKGLASQILPPPISRTDFDKVLARPRPTVSKSDLEVHERFTKEFGEEG 307
ATKGLA +I+PPPI+RTDF+KVLAR RPTVSKSDL+VHERFT+EFGEEG
Sbjct: 387 ATKGLA-EIIPPPITRTDFEKVLARQRPTVSKSDLDVHERFTQEFGEEG 434
>gb|AAL16668.1|AF419850_1 suppressor of K+ transport growth defect-like protein [Musa
acuminata]
Length = 292
Score = 184 bits (468), Expect = 7e-46
Identities = 86/109 (78%), Positives = 98/109 (89%)
Frame = -3
Query: 633 LARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMPDL 454
LAR+TEGFSGSDISVCVKDVLFEPVRK QDA FF K+ +GMW+PCGPKQ GA+Q T+ +L
Sbjct: 184 LARRTEGFSGSDISVCVKDVLFEPVRKAQDATFFCKTSDGMWVPCGPKQPGAVQTTLQEL 243
Query: 453 ATKGLASQILPPPISRTDFDKVLARPRPTVSKSDLEVHERFTKEFGEEG 307
A KGL ++ILPPPI+R DF+KVLAR RPTVSK+DLEVHERFTKEFGEEG
Sbjct: 244 AAKGLGAKILPPPITRNDFEKVLARQRPTVSKADLEVHERFTKEFGEEG 292
>dbj|BAB16447.1| putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)]
Length = 411
Score = 142 bits (357), Expect = 5e-33
Identities = 69/105 (65%), Positives = 84/105 (79%)
Frame = -3
Query: 633 LARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMPDL 454
LA +TEGFSGSDI+VCVKD LF+PVRKTQDA FF K+ + W P Q G+IQ TM +L
Sbjct: 304 LAYQTEGFSGSDIAVCVKDALFQPVRKTQDAKFFIKADDDTWTPSEQSQPGSIQTTMQEL 363
Query: 453 ATKGLASQILPPPISRTDFDKVLARPRPTVSKSDLEVHERFTKEF 319
A+KGLA++IL PPIS+ DFD+VL R RPTVSK DL V+E+FT+EF
Sbjct: 364 ASKGLAAKILLPPISKIDFDEVLVRQRPTVSKKDLVVYEKFTQEF 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,831,065
Number of Sequences: 1393205
Number of extensions: 12091756
Number of successful extensions: 26285
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 25434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26230
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
