Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001737A_C01 KMC001737A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens] 39 0.055
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 39 0.072
ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain cont... 37 0.21
ref|NP_596690.1| hypothetical serine-rich secreted protein [Schi... 36 0.47
ref|NP_508293.1| Putative protein family member, nematode specif... 35 0.61
>ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens]
Length = 252
Score = 38.9 bits (89), Expect = 0.055
Identities = 45/137 (32%), Positives = 60/137 (42%), Gaps = 2/137 (1%)
Frame = +2
Query: 221 SSPNTKKKS*RKIKKKTTKRVLISSTYHRKPGLSQN*TGTSSRVIGSPSLHLGKSHSQPS 400
SSP++ S +T SS+ S N + +SS SPS S S PS
Sbjct: 72 SSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSS--SSPSSSSSSSSSSPS 129
Query: 401 HQN--PSAQSSSS*PEPRDAHGAGSNPSVSSRPT*SSLLSPVRSTRFRFDSGSLRKRTEF 574
+ PS+ SSSS P + S+PS SS + SS SP S+ SGS +
Sbjct: 130 SSSSSPSSSSSSSSSSP---SSSSSSPSSSSSSSSSSSSSP--SSSSPSSSGSSPSSSNS 184
Query: 575 SAVSTDTMLSLSLLSPS 625
S S+ + S S SPS
Sbjct: 185 SPSSSSSSPSSSSSSPS 201
Score = 37.7 bits (86), Expect = 0.12
Identities = 37/112 (33%), Positives = 50/112 (44%)
Frame = +2
Query: 290 SSTYHRKPGLSQN*TGTSSRVIGSPSLHLGKSHSQPSHQNPSAQSSSS*PEPRDAHGAGS 469
SS+ S + + +SS SPS S S PS + S+ SSSS P +GS
Sbjct: 122 SSSSSSPSSSSSSPSSSSSSSSSSPS----SSSSSPSSSSSSSSSSSSSPSSSSPSSSGS 177
Query: 470 NPSVSSRPT*SSLLSPVRSTRFRFDSGSLRKRTEFSAVSTDTMLSLSLLSPS 625
+PS S+ SS SP S S S R+ + S+ + S S SPS
Sbjct: 178 SPSSSNSSPSSSSSSPSSS------SSSPSPRSSSPSSSSSSTSSPSSSSPS 223
Score = 33.5 bits (75), Expect = 2.3
Identities = 29/104 (27%), Positives = 46/104 (43%)
Frame = +2
Query: 314 GLSQN*TGTSSRVIGSPSLHLGKSHSQPSHQNPSAQSSSS*PEPRDAHGAGSNPSVSSRP 493
G S++ + +S ++ S L S S +PS+ SSS P + + S+ S +S P
Sbjct: 33 GGSRSSSSSSRSILSSSILSSSIPSSSSSSSSPSSSPSSSSPSSSHSSSSPSSSSSTSSP 92
Query: 494 T*SSLLSPVRSTRFRFDSGSLRKRTEFSAVSTDTMLSLSLLSPS 625
+ SS S + S S S+ S+ + S S SPS
Sbjct: 93 SSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPS 136
Score = 32.0 bits (71), Expect = 6.7
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +2
Query: 338 TSSRVIGSPSLHLGKSHSQPSHQNPSAQSSSS*PEP-RDAHGAGSNPSVSSRPT*SSLLS 514
+SS SPS S SH + S SSSS P + + S+PS S+ + SS S
Sbjct: 57 SSSSSSSSPSSSPSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSS 116
Query: 515 PVRSTRFRFDS-GSLRKRTEFSAVSTDTMLSLSLLSPS 625
P S+ S S S+ S+ + S S SPS
Sbjct: 117 PSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPS 154
Score = 31.6 bits (70), Expect = 8.8
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Frame = +2
Query: 218 LSSPNTKKKS*RKIKKKTTKRVLISSTYHRKPGLSQN*TGTSSRVIGSPSLHLGKSHSQP 397
++ PN + +++ +L SS S + + + S S S S S P
Sbjct: 24 IAGPNALGSGGSRSSSSSSRSILSSSILSSSIPSSSSSSSSPSSSPSSSSPSSSHSSSSP 83
Query: 398 SHQN----PSAQSSSS*PEPRDAHGAGSNPSVS-SRPT*SSLLSPVRSTRFRFDSGSLRK 562
S + PS+ SSSS P ++ + S+ S S S + SS SP S+ S S
Sbjct: 84 SSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSS 143
Query: 563 RTEFSAVSTDTMLSLSLLSPS 625
+ S+ S+ + S S S S
Sbjct: 144 SSPSSSSSSPSSSSSSSSSSS 164
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 38.5 bits (88), Expect = 0.072
Identities = 43/144 (29%), Positives = 61/144 (41%)
Frame = +2
Query: 194 STHSH*KELSSPNTKKKS*RKIKKKTTKRVLISSTYHRKPGLSQN*TGTSSRVIGSPSLH 373
S+ S SSP++ S ++ SS+ S + + +SS SPS
Sbjct: 93 SSSSSSSSSSSPSSSNSS--SSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPS-- 148
Query: 374 LGKSHSQPSHQNPSAQSSSS*PEPRDAHGAGSNPSVSSRPT*SSLLSPVRSTRFRFDSGS 553
S S PS + S+ SSSS P +GS+PS S+ SS SP S S S
Sbjct: 149 --SSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSS------SSS 200
Query: 554 LRKRTEFSAVSTDTMLSLSLLSPS 625
R+ + S+ + S S SPS
Sbjct: 201 PSPRSSSPSSSSSSTSSPSTSSPS 224
Score = 35.0 bits (79), Expect = 0.80
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Frame = +2
Query: 218 LSSPNTKKKS*RKIKKKTTKRVLISSTYHRKPGLSQN*TGTSSRVIGSPSLHLGKSHSQP 397
++ PN + +++ +L SS LS + +SS S H S S
Sbjct: 24 IAGPNALGSGGSRSSSSSSRSILSSSI------LSSSIPSSSSSSSSPSSSHSSSSPSSS 77
Query: 398 -SHQNPSAQSSSS*PEPRDAHGAGSNPSVSSRPT*SSLLSPVRSTRFRFDS-GSLRKRTE 571
S +PS+ SS+S P + + S+PS S+ + SS SP S+ S S
Sbjct: 78 HSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPS 137
Query: 572 FSAVSTDTMLSLSLLSPS 625
S+ S+ + S S SPS
Sbjct: 138 SSSSSSSSSPSSSSSSPS 155
>ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain containing protein
[Caenorhabditis elegans] gi|7504031|pir||T21064
hypothetical protein F53B7.5 - Caenorhabditis elegans
gi|3876064|emb|CAA96634.1| Hypothetical protein F53B7.5
[Caenorhabditis elegans] gi|3877441|emb|CAA96654.1|
Hypothetical protein F53B7.5 [Caenorhabditis elegans]
Length = 2761
Score = 37.0 bits (84), Expect = 0.21
Identities = 30/81 (37%), Positives = 35/81 (43%)
Frame = +2
Query: 350 VIGSPSLHLGKSHSQPSHQNPSAQSSSS*PEPRDAHGAGSNPSVSSRPT*SSLLSPVRST 529
V SPS S PS + S +SSS P S +VSS P+ SS SP ST
Sbjct: 311 VSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSST 370
Query: 530 RFRFDSGSLRKRTEFSAVSTD 592
S S TE S ST+
Sbjct: 371 GGSDSSSSESVTTEPSGSSTE 391
>ref|NP_596690.1| hypothetical serine-rich secreted protein [Schizosaccharomyces
pombe] gi|7493381|pir||T39903 serine-rich protein -
fission yeast (Schizosaccharomyces pombe)
gi|3873550|emb|CAA22127.1| hypothetical serine-rich
secreted protein [Schizosaccharomyces pombe]
Length = 534
Score = 35.8 bits (81), Expect = 0.47
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Frame = +2
Query: 311 PGLSQN*TGTSSRVIGSPSLHLGKSHSQPSHQNPSAQSSSS*PEPRDAHGAGSNPSVSSR 490
P S + + TSS + S S S S S S+ SSSS P + + S+ S SS
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300
Query: 491 PT*SSLLSPVRSTRFRF----DSGSLRKRTEFSA--VSTDTMLSLSLLSPS 625
+ SS +S S+ F S S+ + FS+ S+ + +S S SPS
Sbjct: 301 TSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351
Score = 32.0 bits (71), Expect = 6.7
Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 6/163 (3%)
Frame = +2
Query: 155 TNNQDGIHIGSWDSTHSH*KELSSPNTKKKS*RKIKKKTTKRVLISSTYHRKPGLSQN*T 334
T + S ST S SS + S ++ +ISS+ S + T
Sbjct: 229 TLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS----SSSSSSPT 284
Query: 335 GTSSRVIGSPSLHLGKSHSQPSHQNPSAQSSSS*PEPRDAHGAGSNPSVSSRPT*SSLL- 511
TSS I S S S S + S+ SSSS + S+ S SS PT SS
Sbjct: 285 STSS-TISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTI 343
Query: 512 ----SPVRSTRFRFDSGSLRKRTEFSA-VSTDTMLSLSLLSPS 625
S S+ F + S + + FS+ VS+ + S S L+ S
Sbjct: 344 SSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSS 386
>ref|NP_508293.1| Putative protein family member, nematode specific [Caenorhabditis
elegans] gi|7505356|pir||T34433 hypothetical protein
K06A9.1a - Caenorhabditis elegans
gi|3834293|gb|AAC70889.1| Hypothetical protein K06A9.1a
[Caenorhabditis elegans]
Length = 1032
Score = 35.4 bits (80), Expect = 0.61
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Frame = +2
Query: 293 STYHRKPGLSQN*TGTSSRVIGSPSLHLGKSHSQPSHQNPS--------AQSSSS*PEPR 448
ST G SQ+ +S+ GS S S QPS Q+P+ +Q+SS P P
Sbjct: 564 STVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSP- 622
Query: 449 DAHGAGSNPSVSSR----PT*SSLLSPVRSTRFRF-------DSGSLRKRTEFSAVSTDT 595
+ + S P+ SS+ P S+ SP ST F ++ + ST++
Sbjct: 623 SMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNS 682
Query: 596 MLSLSLLSPS 625
S S LSPS
Sbjct: 683 SPSPSSLSPS 692
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,305,387
Number of Sequences: 1393205
Number of extensions: 13367479
Number of successful extensions: 44499
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 39987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44188
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
