Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001736A_C01 KMC001736A_c01
(681 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180353.1| putative dTDP-glucose 4-6-dehydratase; protein ... 161 9e-39
ref|NP_563807.1| expressed protein; protein id: At1g08200.1, sup... 159 3e-38
gb|AAM65998.1| putative dTDP-glucose 4-6-dehydratase [Arabidopsi... 158 6e-38
gb|AAK68820.1| similar to dihydroflavonol reductase [Arabidopsis... 152 4e-36
dbj|BAB85329.1| OJ1656_A11.18 [Oryza sativa (japonica cultivar-g... 139 5e-32
>ref|NP_180353.1| putative dTDP-glucose 4-6-dehydratase; protein id: At2g27860.1,
supported by cDNA: 28205., supported by cDNA:
gi_13605496 [Arabidopsis thaliana]
gi|25407929|pir||G84677 probable dTDP-glucose
4-6-dehydratase [imported] - Arabidopsis thaliana
gi|3860247|gb|AAC73015.1| putative dTDP-glucose
4-6-dehydratase [Arabidopsis thaliana]
gi|13605497|gb|AAK32742.1|AF361574_1 At2g27860/F15K20.4
[Arabidopsis thaliana] gi|21555529|gb|AAM63878.1|
putative dTDP-glucose 4-6-dehydratase [Arabidopsis
thaliana] gi|24111293|gb|AAN46770.1| At2g27860/F15K20.4
[Arabidopsis thaliana]
Length = 389
Score = 161 bits (407), Expect = 9e-39
Identities = 75/87 (86%), Positives = 83/87 (95%)
Frame = -2
Query: 680 EMMTKVYSKVSEEAPLENPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWD 501
EMMT+VY+KVS E +E+PT+DVSSKEFYGEGYDDSDKRIPDMTIIN+QLGWNPKTSLWD
Sbjct: 303 EMMTEVYAKVSGEGAIESPTVDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWD 362
Query: 500 LLESTLTYQHRTYAEAIKKAIAKPVAS 420
LLESTLTYQHRTYAEA+KKA +KPVAS
Sbjct: 363 LLESTLTYQHRTYAEAVKKATSKPVAS 389
>ref|NP_563807.1| expressed protein; protein id: At1g08200.1, supported by cDNA:
6892., supported by cDNA: gi_14596184 [Arabidopsis
thaliana] gi|25407031|pir||C86216 protein T23G18.6
[imported] - Arabidopsis thaliana
gi|6579211|gb|AAF18254.1|AC011438_16 T23G18.6
[Arabidopsis thaliana] gi|24899785|gb|AAN65107.1|
similar to dihydroflavonol reductase [Arabidopsis
thaliana]
Length = 389
Score = 159 bits (403), Expect = 3e-38
Identities = 76/87 (87%), Positives = 82/87 (93%)
Frame = -2
Query: 680 EMMTKVYSKVSEEAPLENPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWD 501
EMMT+VY+KVS E +E+PTIDVSSKEFYGEGYDDSDKRIPDMTIIN+QLGWNPKTSLWD
Sbjct: 303 EMMTEVYAKVSGETAIESPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWD 362
Query: 500 LLESTLTYQHRTYAEAIKKAIAKPVAS 420
LLESTLTYQH TYAEAIKKA +KPVAS
Sbjct: 363 LLESTLTYQHTTYAEAIKKATSKPVAS 389
>gb|AAM65998.1| putative dTDP-glucose 4-6-dehydratase [Arabidopsis thaliana]
Length = 389
Score = 158 bits (400), Expect = 6e-38
Identities = 75/87 (86%), Positives = 82/87 (94%)
Frame = -2
Query: 680 EMMTKVYSKVSEEAPLENPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWD 501
EMMT+VY+KVS E +++PTIDVSSKEFYGEGYDDSDKRIPDMTIIN+QLGWNPKTSLWD
Sbjct: 303 EMMTEVYAKVSGETAIDSPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWD 362
Query: 500 LLESTLTYQHRTYAEAIKKAIAKPVAS 420
LLESTLTYQH TYAEAIKKA +KPVAS
Sbjct: 363 LLESTLTYQHTTYAEAIKKATSKPVAS 389
>gb|AAK68820.1| similar to dihydroflavonol reductase [Arabidopsis thaliana]
Length = 389
Score = 152 bits (384), Expect = 4e-36
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = -2
Query: 680 EMMTKVYSKVSEEAPLENPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWD 501
EMMT+VY+KVS E +E+PTIDVSSKEFYGEGYDDSDKRIPDMTIIN+QLG PKTSLWD
Sbjct: 303 EMMTEVYAKVSGETAIESPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGCTPKTSLWD 362
Query: 500 LLESTLTYQHRTYAEAIKKAIAKPVAS 420
LLESTLTYQH TYAEAIKKA +KPVAS
Sbjct: 363 LLESTLTYQHTTYAEAIKKATSKPVAS 389
>dbj|BAB85329.1| OJ1656_A11.18 [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 139 bits (349), Expect = 5e-32
Identities = 66/87 (75%), Positives = 76/87 (86%)
Frame = -2
Query: 680 EMMTKVYSKVSEEAPLENPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWD 501
EMMT+VY+ VS E PL+ P IDVSSK+FYGEGYDDSDKRIPDMTIINKQLGWNPKT L D
Sbjct: 311 EMMTEVYANVSGEPPLDEPMIDVSSKQFYGEGYDDSDKRIPDMTIINKQLGWNPKTPLKD 370
Query: 500 LLESTLTYQHRTYAEAIKKAIAKPVAS 420
LLE+TLTYQH+TY EAIK+ +++ AS
Sbjct: 371 LLETTLTYQHKTYKEAIKRQMSQASAS 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,151,490
Number of Sequences: 1393205
Number of extensions: 12745115
Number of successful extensions: 25778
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 25145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25774
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
