Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001735A_C01 KMC001735A_c01
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563851.1| expressed protein; protein id: At1g09750.1, sup... 149 5e-35
gb|AAK44106.2|AF370291_1 unknown protein [Arabidopsis thaliana] 149 5e-35
emb|CAA06698.1| hypothetical protein [Cicer arietinum] 130 2e-29
ref|NP_196320.1| nucleoid DNA-binding-like protein; protein id: ... 119 4e-26
ref|NP_191008.1| nucleoid DNA-binding - like protein; protein id... 116 3e-25
>ref|NP_563851.1| expressed protein; protein id: At1g09750.1, supported by cDNA:
6295. [Arabidopsis thaliana] gi|25402573|pir||D86231
hypothetical protein [imported] - Arabidopsis thaliana
gi|2160166|gb|AAB60729.1| F21M12.13 gene product
[Arabidopsis thaliana] gi|21593996|gb|AAM65914.1|
nucleoid DNA-binding-like protein [Arabidopsis thaliana]
gi|26983826|gb|AAN86165.1| unknown protein [Arabidopsis
thaliana]
Length = 449
Score = 149 bits (375), Expect = 5e-35
Identities = 79/126 (62%), Positives = 97/126 (76%), Gaps = 2/126 (1%)
Frame = -3
Query: 686 LAFNPSTGAGTVIDSGTVITRFIEPVYAAVREEFRKQVT-GPFSSLGAFDTCFVKTYETL 510
L F+ ++GAGT+IDSGTVITRF +PVY A+R+EFRKQV FS+LGAFDTCF E +
Sbjct: 315 LTFDANSGAGTIIDSGTVITRFAQPVYEAIRDEFRKQVNVSSFSTLGAFDTCFSADNENV 374
Query: 509 APVVTLHLEGLDLKLPLENSLIHSSSGSLG-LPCDGRRRPENVNSVLNVIANYQPQNLRV 333
AP +TLH+ LDLKLP+EN+LIHSS+G+L L G R +N N+VLNVIAN Q QNLR+
Sbjct: 375 APKITLHMTSLDLKLPMENTLIHSSAGTLTCLSMAGIR--QNANAVLNVIANLQQQNLRI 432
Query: 332 LFDTVN 315
LFD N
Sbjct: 433 LFDVPN 438
>gb|AAK44106.2|AF370291_1 unknown protein [Arabidopsis thaliana]
Length = 375
Score = 149 bits (375), Expect = 5e-35
Identities = 79/126 (62%), Positives = 97/126 (76%), Gaps = 2/126 (1%)
Frame = -3
Query: 686 LAFNPSTGAGTVIDSGTVITRFIEPVYAAVREEFRKQVT-GPFSSLGAFDTCFVKTYETL 510
L F+ ++GAGT+IDSGTVITRF +PVY A+R+EFRKQV FS+LGAFDTCF E +
Sbjct: 241 LTFDANSGAGTIIDSGTVITRFAQPVYEAIRDEFRKQVNVSSFSTLGAFDTCFSADNENV 300
Query: 509 APVVTLHLEGLDLKLPLENSLIHSSSGSLG-LPCDGRRRPENVNSVLNVIANYQPQNLRV 333
AP +TLH+ LDLKLP+EN+LIHSS+G+L L G R +N N+VLNVIAN Q QNLR+
Sbjct: 301 APKITLHMTSLDLKLPMENTLIHSSAGTLTCLSMAGIR--QNANAVLNVIANLQQQNLRI 358
Query: 332 LFDTVN 315
LFD N
Sbjct: 359 LFDVPN 364
>emb|CAA06698.1| hypothetical protein [Cicer arietinum]
Length = 99
Score = 130 bits (326), Expect = 2e-29
Identities = 68/89 (76%), Positives = 72/89 (80%)
Frame = -3
Query: 581 KQVTGPFSSLGAFDTCFVKTYETLAPVVTLHLEGLDLKLPLENSLIHSSSGSLGLPCDGR 402
KQVTGPFSSLGAFDTCFVKTYETLAP +TL L+L LP+ENSLIHSSSGSL
Sbjct: 1 KQVTGPFSSLGAFDTCFVKTYETLAPAITLRFTDLNLTLPMENSLIHSSSGSLACLAMA- 59
Query: 401 RRPENVNSVLNVIANYQPQNLRVLFDTVN 315
P NVNSVLNVIAN+Q QNLRVLFDTVN
Sbjct: 60 AAPSNVNSVLNVIANFQQQNLRVLFDTVN 88
>ref|NP_196320.1| nucleoid DNA-binding-like protein; protein id: At5g07030.1,
supported by cDNA: 15560. [Arabidopsis thaliana]
gi|9759559|dbj|BAB11161.1| nucleoid DNA-binding-like
protein [Arabidopsis thaliana]
gi|21553652|gb|AAM62745.1| nucleoid DNA-binding-like
protein [Arabidopsis thaliana]
Length = 439
Score = 119 bits (298), Expect = 4e-26
Identities = 64/127 (50%), Positives = 85/127 (66%), Gaps = 3/127 (2%)
Frame = -3
Query: 686 LAFNPSTGAGTVIDSGTVITRFIEPVYAAVREEFRKQV---TGPFSSLGAFDTCFVKTYE 516
+AFNPSTGAGT+ DSGTV TR +PVY AVR EFRK+V T +SLG FDTC+ + +
Sbjct: 305 IAFNPSTGAGTIFDSGTVYTRLAKPVYEAVRNEFRKRVKPTTAVVTSLGGFDTCY--SGQ 362
Query: 515 TLAPVVTLHLEGLDLKLPLENSLIHSSSGSLGLPCDGRRRPENVNSVLNVIANYQPQNLR 336
P +T +G+++ +P +N ++HS++GS PENVNSV+NVIA+ Q QN R
Sbjct: 363 VKVPTITFMFKGVNMTMPADNLMLHSTAGSTSCLAMA-AAPENVNSVVNVIASMQQQNHR 421
Query: 335 VLFDTVN 315
VL D N
Sbjct: 422 VLIDVPN 428
>ref|NP_191008.1| nucleoid DNA-binding - like protein; protein id: At3g54400.1,
supported by cDNA: 8987., supported by cDNA: gi_17979256
[Arabidopsis thaliana] gi|11358589|pir||T47599 nucleoid
DNA-binding-like protein - Arabidopsis thaliana
gi|7288018|emb|CAB81805.1| nucleoid DNA-binding-like
protein [Arabidopsis thaliana]
gi|17979257|gb|AAL49945.1| AT3g54400/T12E18_90
[Arabidopsis thaliana] gi|21700851|gb|AAM70549.1|
AT3g54400/T12E18_90 [Arabidopsis thaliana]
Length = 425
Score = 116 bits (291), Expect = 3e-25
Identities = 66/125 (52%), Positives = 83/125 (65%), Gaps = 1/125 (0%)
Frame = -3
Query: 686 LAFNPSTGAGTVIDSGTVITRFIEPVYAAVREEFRKQV-TGPFSSLGAFDTCFVKTYETL 510
LAF+P+TGAGT+ DSGTV TR +EP Y AVR EFR++V +SLG FDTC+ + +
Sbjct: 293 LAFDPATGAGTIFDSGTVYTRLVEPAYVAVRNEFRRRVKNANATSLGGFDTCY--SGSVV 350
Query: 509 APVVTLHLEGLDLKLPLENSLIHSSSGSLGLPCDGRRRPENVNSVLNVIANYQPQNLRVL 330
P VT G+++ LP +N LIHSS+G+L P NVNSVLNVIA+ Q QN RVL
Sbjct: 351 FPSVTFMFAGMNVTLPPDNLLIHSSAGNLSCLAMA-AAPVNVNSVLNVIASMQQQNHRVL 409
Query: 329 FDTVN 315
D N
Sbjct: 410 IDVPN 414
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,245,333
Number of Sequences: 1393205
Number of extensions: 12206657
Number of successful extensions: 32989
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 31650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32938
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
