Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001732A_C01 KMC001732A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172575.1| Serine carboxypeptidase isolog; protein id: At1... 148 3e-48
ref|NP_176308.1| hypothetical protein; protein id: At1g61130.1 [... 141 4e-44
ref|NP_193246.1| hydroxynitrile lyase like protein; protein id: ... 134 4e-40
pir||B96637 hypothetical protein F11P17.14 [imported] - Arabidop... 122 3e-38
ref|NP_179979.1| putative serine carboxypeptidase II; protein id... 114 6e-31
>ref|NP_172575.1| Serine carboxypeptidase isolog; protein id: At1g11080.1
[Arabidopsis thaliana] gi|25289784|pir||G86244 Serine
carboxypeptidase homolog, 30227-33069 [imported] -
Arabidopsis thaliana gi|1931640|gb|AAB65475.1| Serine
carboxypeptidase isolog; 30227-33069 [Arabidopsis
thaliana]
Length = 465
Score = 148 bits (373), Expect(2) = 3e-48
Identities = 62/86 (72%), Positives = 74/86 (85%)
Frame = -1
Query: 505 KNWSICNHNIFNNWGDSKPSVIPIYKKLISAGLKIWVYSGDTDGRVPVLSTRYSLSSLAL 326
KNWSICN IFNNW S PSV+PIY+KLI+ GL+IWVYSGDTDGRVPVL+TRYSL++L L
Sbjct: 344 KNWSICNMEIFNNWTGSNPSVLPIYEKLIAGGLRIWVYSGDTDGRVPVLATRYSLNALEL 403
Query: 325 PVTKPWRPWYHDNEVSGWFEEYQGLT 248
P+ WRPWYH+ +VSGW +EY+GLT
Sbjct: 404 PIKTAWRPWYHEKQVSGWLQEYEGLT 429
Score = 65.1 bits (157), Expect(2) = 3e-48
Identities = 29/37 (78%), Positives = 33/37 (88%)
Frame = -3
Query: 248 TFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPPSTQ 138
TFATFRGAGHAVPCFKPS+SLAFFS+FL G PP ++
Sbjct: 429 TFATFRGAGHAVPCFKPSSSLAFFSAFLSGVPPPPSR 465
>ref|NP_176308.1| hypothetical protein; protein id: At1g61130.1 [Arabidopsis
thaliana]
Length = 476
Score = 141 bits (356), Expect(2) = 4e-44
Identities = 60/88 (68%), Positives = 73/88 (82%), Gaps = 2/88 (2%)
Frame = -1
Query: 505 KNWSICNHNIFN--NWGDSKPSVIPIYKKLISAGLKIWVYSGDTDGRVPVLSTRYSLSSL 332
KNW+ICN +I N NW DSK SV+PIYKKLI+ G ++WVYSGDTDGRVPVLSTRY ++ L
Sbjct: 353 KNWTICNDDILNHWNWTDSKRSVLPIYKKLIAGGFRVWVYSGDTDGRVPVLSTRYCINKL 412
Query: 331 ALPVTKPWRPWYHDNEVSGWFEEYQGLT 248
LP+ WRPWYH+ +VSGWF+EY+GLT
Sbjct: 413 ELPIKTAWRPWYHETQVSGWFQEYEGLT 440
Score = 57.8 bits (138), Expect(2) = 4e-44
Identities = 27/34 (79%), Positives = 28/34 (81%)
Frame = -3
Query: 248 TFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPP 147
TFATFRGAGH VP FKPS SLAFFS+FL G PP
Sbjct: 440 TFATFRGAGHDVPSFKPSESLAFFSAFLNGVPPP 473
>ref|NP_193246.1| hydroxynitrile lyase like protein; protein id: At4g15100.1
[Arabidopsis thaliana] gi|7485011|pir||G71414
hydroxymandelonitrile lyase (EC 4.1.2.11) chain A -
Arabidopsis thaliana gi|2244867|emb|CAB10289.1|
hydroxynitrile lyase like protein [Arabidopsis thaliana]
gi|7268256|emb|CAB78552.1| hydroxynitrile lyase like
protein [Arabidopsis thaliana]
Length = 407
Score = 134 bits (338), Expect(2) = 4e-40
Identities = 57/86 (66%), Positives = 69/86 (79%)
Frame = -1
Query: 505 KNWSICNHNIFNNWGDSKPSVIPIYKKLISAGLKIWVYSGDTDGRVPVLSTRYSLSSLAL 326
KNWSICN IF+NW SV+PIY+KLI+ GL+IWVYSGDTDG +PVL TRYSL++L L
Sbjct: 282 KNWSICNMEIFHNWTYVVQSVLPIYQKLIAGGLRIWVYSGDTDGCIPVLGTRYSLNALGL 341
Query: 325 PVTKPWRPWYHDNEVSGWFEEYQGLT 248
P+ WRPWYH+ +VSGW +EY GLT
Sbjct: 342 PIKTAWRPWYHEKQVSGWVQEYDGLT 367
Score = 51.6 bits (122), Expect(2) = 4e-40
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -3
Query: 248 TFATFRGAGHAVPCFKPSNSLAFFSSFLLG 159
TFATFRGAGH VP FKPS+SLAF S+F+ G
Sbjct: 367 TFATFRGAGHTVPSFKPSSSLAFISAFVKG 396
>pir||B96637 hypothetical protein F11P17.14 [imported] - Arabidopsis thaliana
gi|2443888|gb|AAB71481.1| similar to serine
carboxypeptidases [Arabidopsis thaliana]
Length = 470
Score = 122 bits (306), Expect(2) = 3e-38
Identities = 55/88 (62%), Positives = 67/88 (75%), Gaps = 2/88 (2%)
Frame = -1
Query: 505 KNWSICNHNIFN--NWGDSKPSVIPIYKKLISAGLKIWVYSGDTDGRVPVLSTRYSLSSL 332
KNW+ICN +I N NW DSK SV+PIYKKLI+ G ++WVYSGDTDGRVPVLSTRY ++ L
Sbjct: 353 KNWTICNDDILNHWNWTDSKRSVLPIYKKLIAGGFRVWVYSGDTDGRVPVLSTRYCINKL 412
Query: 331 ALPVTKPWRPWYHDNEVSGWFEEYQGLT 248
LP+ WRPWYH+ +EY+GLT
Sbjct: 413 ELPIKTAWRPWYHET------QEYEGLT 434
Score = 57.8 bits (138), Expect(2) = 3e-38
Identities = 27/34 (79%), Positives = 28/34 (81%)
Frame = -3
Query: 248 TFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPP 147
TFATFRGAGH VP FKPS SLAFFS+FL G PP
Sbjct: 434 TFATFRGAGHDVPSFKPSESLAFFSAFLNGVPPP 467
>ref|NP_179979.1| putative serine carboxypeptidase II; protein id: At2g24010.1
[Arabidopsis thaliana] gi|25289799|pir||E84631 probable
serine carboxypeptidase II [imported] - Arabidopsis
thaliana gi|3738328|gb|AAC63669.1| putative serine
carboxypeptidase II [Arabidopsis thaliana]
Length = 425
Score = 114 bits (286), Expect(2) = 6e-31
Identities = 49/84 (58%), Positives = 63/84 (74%)
Frame = -1
Query: 499 WSICNHNIFNNWGDSKPSVIPIYKKLISAGLKIWVYSGDTDGRVPVLSTRYSLSSLALPV 320
W++CN + NNW DS+ S++PIYK+L +AGL+IWV+SGDTD VPV TR +LS L LPV
Sbjct: 306 WTLCNMVVNNNWKDSEFSMLPIYKELTAAGLRIWVFSGDTDAVVPVTGTRLALSKLNLPV 365
Query: 319 TKPWRPWYHDNEVSGWFEEYQGLT 248
PW PWY + +V GW E Y+GLT
Sbjct: 366 KTPWYPWYSEKQVGGWTEVYEGLT 389
Score = 40.8 bits (94), Expect(2) = 6e-31
Identities = 18/34 (52%), Positives = 21/34 (60%)
Frame = -3
Query: 248 TFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPP 147
TFAT RGAGH VP +P +L SFL G+ P
Sbjct: 389 TFATIRGAGHEVPVLQPERALTLLRSFLAGKELP 422
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,970,018
Number of Sequences: 1393205
Number of extensions: 9607380
Number of successful extensions: 26200
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 25523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26170
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
