Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001730A_C01 KMC001730A_c01
(764 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194641.1| putative protein; protein id: At4g29120.1, supp... 228 9e-59
dbj|BAB91928.1| putative dehydrogenase [Oryza sativa (japonica c... 211 9e-54
gb|ZP_00069529.1| hypothetical protein [Oenococcus oeni MCW] 134 2e-30
ref|NP_389279.1| similar to 3-hydroxyisobutyrate dehydrogenase [... 131 9e-30
ref|NP_658080.1| 6PGD, 6-phosphogluconate dehydrogenase [Bacillu... 127 1e-28
>ref|NP_194641.1| putative protein; protein id: At4g29120.1, supported by cDNA:
gi_13877868, supported by cDNA: gi_17065607 [Arabidopsis
thaliana] gi|7485743|pir||T08967 hypothetical protein
F19B15.150 - Arabidopsis thaliana
gi|4972058|emb|CAB43926.1| putative protein [Arabidopsis
thaliana] gi|7269810|emb|CAB79670.1| putative protein
[Arabidopsis thaliana]
gi|13877869|gb|AAK44012.1|AF370197_1 unknown protein
[Arabidopsis thaliana] gi|17065608|gb|AAL33784.1|
unknown protein [Arabidopsis thaliana]
Length = 334
Score = 228 bits (580), Expect = 9e-59
Identities = 112/139 (80%), Positives = 128/139 (91%)
Frame = -3
Query: 762 YMGGSGKGQFAKLANQITIASTMVGLVEGMVYAQKAGLDVELYLNAISTGAAGSKSLDLY 583
+MG SGKGQFAKLANQITIASTM+GLVEG++YA KAGLDV+ +L AISTGAAGSKS+DLY
Sbjct: 196 FMGTSGKGQFAKLANQITIASTMLGLVEGLIYAHKAGLDVKKFLEAISTGAAGSKSIDLY 255
Query: 582 GKRILKRDFEAGFYVNHFVKDLGICLKECQKMGIALPGLALAQQLYVSLQAHGEGNLGTQ 403
G RILKRDF+ GFYVNHFVKDLGICL ECQ+MG+ALPGLALAQQLY+SL+AHGEG+LGTQ
Sbjct: 256 GDRILKRDFDPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHGEGDLGTQ 315
Query: 402 ALVLVLERLNHVSLTPSSS 346
AL+L LERLN+VS+ S S
Sbjct: 316 ALLLALERLNNVSVQSSDS 334
>dbj|BAB91928.1| putative dehydrogenase [Oryza sativa (japonica cultivar-group)]
Length = 316
Score = 211 bits (537), Expect = 9e-54
Identities = 107/134 (79%), Positives = 114/134 (84%)
Frame = -3
Query: 762 YMGGSGKGQFAKLANQITIASTMVGLVEGMVYAQKAGLDVELYLNAISTGAAGSKSLDLY 583
YMGG G GQ AKL NQI IASTMVGLVEGMVYA KAGLDV +L AISTGAAGSKSLDLY
Sbjct: 178 YMGGPGAGQRAKLGNQIAIASTMVGLVEGMVYAHKAGLDVAKWLEAISTGAAGSKSLDLY 237
Query: 582 GKRILKRDFEAGFYVNHFVKDLGICLKECQKMGIALPGLALAQQLYVSLQAHGEGNLGTQ 403
GKR+L+RD AGFYV HFVKDLGICL ECQ MG+ALPGLALA QLYVSL AHGEG LGTQ
Sbjct: 238 GKRMLERDMAAGFYVRHFVKDLGICLSECQAMGLALPGLALAHQLYVSLLAHGEGGLGTQ 297
Query: 402 ALVLVLERLNHVSL 361
AL+L +ERLN+ L
Sbjct: 298 ALILAIERLNNTCL 311
>gb|ZP_00069529.1| hypothetical protein [Oenococcus oeni MCW]
Length = 289
Score = 134 bits (336), Expect = 2e-30
Identities = 69/124 (55%), Positives = 86/124 (68%), Gaps = 1/124 (0%)
Frame = -3
Query: 762 YMGGSGKGQFAKLANQITIASTMVGLVEGMVYAQKAGLDVELYLNAISTGAAGSKSLDLY 583
Y GG+GKGQ AK+ANQI IASTM+GL E M YA+ AGLD++ LN +S G A + S+D Y
Sbjct: 159 YFGGAGKGQHAKMANQIMIASTMLGLAEWMTYAKAAGLDLQETLNTLSAGGADNWSMDTY 218
Query: 582 GKRILKRDFEAGFYVNHFVKDLGICLKECQKMGIALPGLALAQQLYVSLQAHGE-GNLGT 406
RILK DF+ GFY H +KDL I L E KMG+ LP LA+++Y L + GNLGT
Sbjct: 219 APRILKEDFKPGFYAKHILKDLRIALDEANKMGLDLPETKLAEKMYAELTDEKKLGNLGT 278
Query: 405 QALV 394
QA+V
Sbjct: 279 QAIV 282
>ref|NP_389279.1| similar to 3-hydroxyisobutyrate dehydrogenase [Bacillus subtilis]
gi|3183454|sp|O34948|YKWC_BACSU Hypothetical
oxidoreductase ykwC gi|7431186|pir||B69870
3-hydroxyisobutyrate dehydrogenase homolog ykwC -
Bacillus subtilis gi|2632217|emb|CAA10859.1| YkwC
protein [Bacillus subtilis] gi|2633767|emb|CAB13269.1|
ykwC [Bacillus subtilis subsp. subtilis str. 168]
Length = 288
Score = 131 bits (330), Expect = 9e-30
Identities = 65/122 (53%), Positives = 86/122 (70%)
Frame = -3
Query: 762 YMGGSGKGQFAKLANQITIASTMVGLVEGMVYAQKAGLDVELYLNAISTGAAGSKSLDLY 583
Y G +G GQ K+ NQI IA+ M+G+ E M YAQK+GL+ E L +I+TGAAGS SL
Sbjct: 161 YQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLSNL 220
Query: 582 GKRILKRDFEAGFYVNHFVKDLGICLKECQKMGIALPGLALAQQLYVSLQAHGEGNLGTQ 403
R+L+ +FE GFYV HF+KD+GI L+E + MG +PGL+LA+ LY L A GE N GTQ
Sbjct: 221 APRMLQGNFEPGFYVKHFIKDMGIALEEAELMGEEMPGLSLAKSLYDKLAAQGEENSGTQ 280
Query: 402 AL 397
++
Sbjct: 281 SI 282
>ref|NP_658080.1| 6PGD, 6-phosphogluconate dehydrogenase [Bacillus anthracis A2012]
Length = 154
Score = 127 bits (320), Expect = 1e-28
Identities = 65/120 (54%), Positives = 83/120 (69%)
Frame = -3
Query: 756 GGSGKGQFAKLANQITIASTMVGLVEGMVYAQKAGLDVELYLNAISTGAAGSKSLDLYGK 577
G +G GQ K+ NQI IAS M+G+ E + YA+KAGLD + L +ISTGAAGS SL
Sbjct: 27 GPAGSGQHTKMCNQIAIASNMIGVCEAVAYAKKAGLDPDKVLESISTGAAGSWSLSNLAP 86
Query: 576 RILKRDFEAGFYVNHFVKDLGICLKECQKMGIALPGLALAQQLYVSLQAHGEGNLGTQAL 397
R+LK DFE GFYV HF+KD+ I L E +K+ + +PGL+LA++LY L GE N GTQ L
Sbjct: 87 RMLKGDFEPGFYVKHFMKDMKIALDEAEKLQLPVPGLSLAKELYEELIKDGEENSGTQVL 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685,914,658
Number of Sequences: 1393205
Number of extensions: 16041673
Number of successful extensions: 83481
Number of sequences better than 10.0: 1300
Number of HSP's better than 10.0 without gapping: 65295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78960
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
