Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001729A_C01 KMC001729A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK27150.1| MADS box transcription factor [Ipomoea batatas] g... 81 5e-15
dbj|BAB70736.1| putative MADS-domain transcription factor MpMADS... 80 1e-14
gb|AAF22455.1| MADS box protein [Paulownia kawakamii] 77 7e-14
gb|AAK27151.1| MADS box transcription factor [Ipomoea batatas] g... 73 1e-12
gb|AAK21250.1|AF335237_1 MADS-box transcription factor FBP13 [Pe... 71 7e-12
>gb|AAK27150.1| MADS box transcription factor [Ipomoea batatas]
gi|22779230|dbj|BAC15561.1| IbMADS3 [Ipomoea batatas]
Length = 227
Score = 81.3 bits (199), Expect = 5e-15
Identities = 45/79 (56%), Positives = 54/79 (67%)
Frame = -1
Query: 476 EINGLQIKGKPLMEENERLKRHVAGMISTGLMHGDTESELLVMEEGHSSESVTNVCNSTT 297
EIN LQ KG LMEE ERL + V + + + S+ ++ EEG SSES+TNVCNST+
Sbjct: 149 EINELQQKGMNLMEEKERLTQQVMAISNGQRVTAVINSDNMLNEEGLSSESITNVCNSTS 208
Query: 296 GPPLEDDSSDTSLKLGLPY 240
P DDSSDTSLKLGLPY
Sbjct: 209 PPQDYDDSSDTSLKLGLPY 227
>dbj|BAB70736.1| putative MADS-domain transcription factor MpMADS1 [Magnolia
praecocissima]
Length = 229
Score = 80.1 bits (196), Expect = 1e-14
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
Frame = -1
Query: 476 EINGLQIKGKPLMEENERLKRHVAGMISTGLMHGDT---ESELLVMEEGHSSESVTNVCN 306
EI+GLQIKG LMEEN RL++ + M S G GD ESE++V E+G SS+SVTN CN
Sbjct: 149 EISGLQIKGVKLMEENMRLRQRIIEM-SRGDSKGDRQIIESEIVVNEDGQSSDSVTNACN 207
Query: 305 STTGPPLEDDSSDTSLKLGLPY 240
S G P + +SSDTSLKLG+P+
Sbjct: 208 S--GAPQDYESSDTSLKLGVPF 227
>gb|AAF22455.1| MADS box protein [Paulownia kawakamii]
Length = 227
Score = 77.4 bits (189), Expect = 7e-14
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = -1
Query: 455 KGKPLMEENERLKRHVAGMISTGLMHGDTESELLVMEEGHSSESVTNVCNSTTGPPLEDD 276
KGK LMEENERL++ VA + + + ++SE +V +EG SSESV N CNS GPP + D
Sbjct: 156 KGKQLMEENERLRQQVADISNDCKNNAASDSENIVYDEGQSSESV-NACNS-VGPPQDYD 213
Query: 275 SSDTSLKLGLPY*G 234
SSDTSLKLGLPY G
Sbjct: 214 SSDTSLKLGLPYSG 227
>gb|AAK27151.1| MADS box transcription factor [Ipomoea batatas]
gi|22779232|dbj|BAC15562.1| IbMADS4 [Ipomoea batatas]
Length = 229
Score = 73.2 bits (178), Expect = 1e-12
Identities = 43/80 (53%), Positives = 54/80 (66%), Gaps = 2/80 (2%)
Frame = -1
Query: 476 EINGLQIKGKPLMEENERLKRHVAGMISTGL-MHGDTESELLVMEEGHSSESVT-NVCNS 303
EI LQ KG LM+EN++LK +A + + D E+ L+ EEG SSES+T NVC+
Sbjct: 148 EIATLQRKGAELMKENKQLKEKMARVNGEKFPVIADVEAAGLIPEEGQSSESITTNVCSC 207
Query: 302 TTGPPLEDDSSDTSLKLGLP 243
+GPP EDD SDTSLKLGLP
Sbjct: 208 NSGPPPEDDCSDTSLKLGLP 227
>gb|AAK21250.1|AF335237_1 MADS-box transcription factor FBP13 [Petunia x hybrida]
Length = 245
Score = 70.9 bits (172), Expect = 7e-12
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 19/99 (19%)
Frame = -1
Query: 479 NEINGLQIKGKPLMEENERLKRHVAGMISTGLMHGDTESELLVMEEGHSSESV-TNVCNS 303
+EI LQ KG LMEEN++LK+ + ++S G + +E E +VMEEG SSES+ T+VC+
Sbjct: 147 DEITNLQKKGADLMEENKQLKQKMV-IMSEGKLPLHSELECMVMEEGQSSESITTHVCSC 205
Query: 302 TTGPP------------------LEDDSSDTSLKLGLPY 240
++GPP +EDD SDT LKLGLP+
Sbjct: 206 SSGPPEDDYSNASLKLGCSNGPTVEDDCSDTFLKLGLPF 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,844,744
Number of Sequences: 1393205
Number of extensions: 6997716
Number of successful extensions: 26950
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 26529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26916
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
