Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001722A_C01 KMC001722A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564774.1| expressed protein; protein id: At1g61350.1, sup... 129 3e-29
gb|AAL14389.1| At1g61350/T1F9_16 [Arabidopsis thaliana] 129 3e-29
ref|NP_199903.1| putative protein; protein id: At5g50900.1, supp... 44 0.001
gb|AAK64166.1| unknown protein [Arabidopsis thaliana] 44 0.001
ref|NP_178638.1| hypothetical protein; protein id: At2g05810.1, ... 40 0.016
>ref|NP_564774.1| expressed protein; protein id: At1g61350.1, supported by cDNA:
gi_16209657, supported by cDNA: gi_18700124 [Arabidopsis
thaliana] gi|25404883|pir||B96639 protein T1F9.16
[imported] - Arabidopsis thaliana
gi|3056595|gb|AAC13906.1|AAC13906 T1F9.16 [Arabidopsis
thaliana] gi|18700125|gb|AAL77674.1| At1g61350/T1F9_16
[Arabidopsis thaliana]
Length = 573
Score = 129 bits (323), Expect = 3e-29
Identities = 68/96 (70%), Positives = 78/96 (80%), Gaps = 5/96 (5%)
Frame = -2
Query: 577 RKRFVQDDHNIALLLQLLDPNEG-----DSGNKKFLISILMSLTNCNSGRKKIVSSGYAK 413
RK+F QDD NI+ +LQLLD +G DSGN KFLISILMSLT+CNS R+KI SSGY K
Sbjct: 479 RKKFAQDDFNISYILQLLDHEDGSNVSSDSGNTKFLISILMSLTSCNSARRKIASSGYLK 538
Query: 412 HIDKLAEAEGSSDAKRLVKKLSTNRFRSMLNGIWHS 305
I+KLAE EG SDAK+LVKKLS NRFRS+L+GIWHS
Sbjct: 539 SIEKLAETEG-SDAKKLVKKLSMNRFRSILSGIWHS 573
>gb|AAL14389.1| At1g61350/T1F9_16 [Arabidopsis thaliana]
Length = 573
Score = 129 bits (323), Expect = 3e-29
Identities = 68/96 (70%), Positives = 78/96 (80%), Gaps = 5/96 (5%)
Frame = -2
Query: 577 RKRFVQDDHNIALLLQLLDPNEG-----DSGNKKFLISILMSLTNCNSGRKKIVSSGYAK 413
RK+F QDD NI+ +LQLLD +G DSGN KFLISILMSLT+CNS R+KI SSGY K
Sbjct: 479 RKKFAQDDFNISYILQLLDHEDGSNVSSDSGNTKFLISILMSLTSCNSARRKIASSGYLK 538
Query: 412 HIDKLAEAEGSSDAKRLVKKLSTNRFRSMLNGIWHS 305
I+KLAE EG SDAK+LVKKLS NRFRS+L+GIWHS
Sbjct: 539 SIEKLAETEG-SDAKKLVKKLSMNRFRSILSGIWHS 573
>ref|NP_199903.1| putative protein; protein id: At5g50900.1, supported by cDNA:
gi_14532769 [Arabidopsis thaliana]
gi|9758237|dbj|BAB08736.1|
gene_id:K3K7.4~pir||T02475~similar to unknown protein
[Arabidopsis thaliana]
Length = 555
Score = 44.3 bits (103), Expect = 0.001
Identities = 26/80 (32%), Positives = 46/80 (57%)
Frame = -2
Query: 577 RKRFVQDDHNIALLLQLLDPNEGDSGNKKFLISILMSLTNCNSGRKKIVSSGYAKHIDKL 398
RK F + D + L+QLLDP + +K++ +S L L RK++V++G H+ KL
Sbjct: 470 RKIFKKSDKGVVSLVQLLDP-KIKKLDKRYTVSALELLVTSKKCRKQVVAAGACLHLQKL 528
Query: 397 AEAEGSSDAKRLVKKLSTNR 338
+ + + AK+L + LS ++
Sbjct: 529 VDMD-TEGAKKLAENLSRSK 547
>gb|AAK64166.1| unknown protein [Arabidopsis thaliana]
Length = 555
Score = 44.3 bits (103), Expect = 0.001
Identities = 26/80 (32%), Positives = 46/80 (57%)
Frame = -2
Query: 577 RKRFVQDDHNIALLLQLLDPNEGDSGNKKFLISILMSLTNCNSGRKKIVSSGYAKHIDKL 398
RK F + D + L+QLLDP + +K++ +S L L RK++V++G H+ KL
Sbjct: 470 RKIFKKSDKGVVSLVQLLDP-KIKKLDKRYTVSALELLVTSKKCRKQVVAAGACLHLQKL 528
Query: 397 AEAEGSSDAKRLVKKLSTNR 338
+ + + AK+L + LS ++
Sbjct: 529 VDMD-TEGAKKLAENLSRSK 547
>ref|NP_178638.1| hypothetical protein; protein id: At2g05810.1, supported by cDNA:
gi_20466607 [Arabidopsis thaliana]
gi|25411189|pir||F84471 hypothetical protein At2g05810
[imported] - Arabidopsis thaliana
gi|20197848|gb|AAM15279.1| hypothetical protein
[Arabidopsis thaliana] gi|20466608|gb|AAM20621.1|
unknown protein [Arabidopsis thaliana]
Length = 580
Score = 40.4 bits (93), Expect = 0.016
Identities = 21/86 (24%), Positives = 45/86 (51%), Gaps = 2/86 (2%)
Frame = -2
Query: 577 RKRFVQDDHNIALLLQLLDPNEGDSGNKKFLISILMSLTNCNS--GRKKIVSSGYAKHID 404
RK ++D+ ++ L+Q+LDP NK+ + ++ ++ + S R K++ G +++
Sbjct: 486 RKELMRDEKSVIRLVQMLDPRNERMNNKELPVMVVTAILSGGSYAARTKLIGLGADRYLQ 545
Query: 403 KLAEAEGSSDAKRLVKKLSTNRFRSM 326
L E E K + + + NR +S+
Sbjct: 546 SLEEMEVPGAKKAVQRLAAGNRLKSI 571
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,721,023
Number of Sequences: 1393205
Number of extensions: 9430920
Number of successful extensions: 24096
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24073
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
