Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001721A_C01 KMC001721A_c01
(775 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO19365.1| unknown protein [Oryza sativa (japonica cultivar-... 139 6e-32
pir||C96587 hypothetical protein F20D21.34 [imported] - Arabidop... 125 7e-28
gb|AAG42914.1|AF327533_1 unknown protein [Arabidopsis thaliana] ... 125 7e-28
ref|NP_564660.1| expressed protein; protein id: At1g54520.1, sup... 125 7e-28
ref|NP_441856.1| hypothetical protein [Synechocystis sp. PCC 680... 87 3e-16
>gb|AAO19365.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 139 bits (349), Expect = 6e-32
Identities = 68/78 (87%), Positives = 74/78 (94%)
Frame = -3
Query: 773 ANGFSNEYIVITILAAAEGEHKLPSINGSGNLKDALQKLGSIPSSRLLAVEVLWTPQNEN 594
++GFSNEYIVITIL AAEG HKLPSINGSG+LK ALQKLG+IPS ++LAVEVLWTPQNEN
Sbjct: 321 SSGFSNEYIVITILVAAEGVHKLPSINGSGDLKTALQKLGAIPSRKILAVEVLWTPQNEN 380
Query: 593 DTLSERELLEDYPLLRPL 540
DTLSERELLEDYPLLRPL
Sbjct: 381 DTLSERELLEDYPLLRPL 398
>pir||C96587 hypothetical protein F20D21.34 [imported] - Arabidopsis thaliana
gi|4585994|gb|AAD25630.1|AC005287_32 Hypothetical
protein [Arabidopsis thaliana]
Length = 303
Score = 125 bits (314), Expect = 7e-28
Identities = 61/78 (78%), Positives = 70/78 (89%)
Frame = -3
Query: 773 ANGFSNEYIVITILAAAEGEHKLPSINGSGNLKDALQKLGSIPSSRLLAVEVLWTPQNEN 594
A+GFSNEYIV+TIL AAEG HKLP ING+ +LK+AL KLGSIP ++++AVEVLWTPQNE
Sbjct: 226 ASGFSNEYIVVTILMAAEGIHKLPPINGTTDLKEALLKLGSIPRNKIMAVEVLWTPQNEA 285
Query: 593 DTLSERELLEDYPLLRPL 540
D LSERELLEDYPLLRPL
Sbjct: 286 DALSERELLEDYPLLRPL 303
>gb|AAG42914.1|AF327533_1 unknown protein [Arabidopsis thaliana]
gi|13926263|gb|AAK49603.1|AF372887_1 At1g54520/F20D21_34
[Arabidopsis thaliana] gi|28416543|gb|AAO42802.1|
At1g54520/F20D21_34 [Arabidopsis thaliana]
Length = 391
Score = 125 bits (314), Expect = 7e-28
Identities = 61/78 (78%), Positives = 70/78 (89%)
Frame = -3
Query: 773 ANGFSNEYIVITILAAAEGEHKLPSINGSGNLKDALQKLGSIPSSRLLAVEVLWTPQNEN 594
A+GFSNEYIV+TIL AAEG HKLP ING+ +LK+AL KLGSIP ++++AVEVLWTPQNE
Sbjct: 314 ASGFSNEYIVVTILMAAEGIHKLPPINGTTDLKEALLKLGSIPRNKIMAVEVLWTPQNEA 373
Query: 593 DTLSERELLEDYPLLRPL 540
D LSERELLEDYPLLRPL
Sbjct: 374 DALSERELLEDYPLLRPL 391
>ref|NP_564660.1| expressed protein; protein id: At1g54520.1, supported by cDNA:
13758., supported by cDNA: gi_11993860, supported by
cDNA: gi_13926262, supported by cDNA: gi_20260341
[Arabidopsis thaliana] gi|20260342|gb|AAM13069.1|
unknown protein [Arabidopsis thaliana]
gi|21537407|gb|AAM61748.1| unknown [Arabidopsis
thaliana]
Length = 391
Score = 125 bits (314), Expect = 7e-28
Identities = 61/78 (78%), Positives = 70/78 (89%)
Frame = -3
Query: 773 ANGFSNEYIVITILAAAEGEHKLPSINGSGNLKDALQKLGSIPSSRLLAVEVLWTPQNEN 594
A+GFSNEYIV+TIL AAEG HKLP ING+ +LK+AL KLGSIP ++++AVEVLWTPQNE
Sbjct: 314 ASGFSNEYIVVTILMAAEGIHKLPPINGTTDLKEALLKLGSIPRNKIMAVEVLWTPQNEA 373
Query: 593 DTLSERELLEDYPLLRPL 540
D LSERELLEDYPLLRPL
Sbjct: 374 DALSERELLEDYPLLRPL 391
>ref|NP_441856.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|7469559|pir||S76405 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
gi|1653622|dbj|BAA18534.1| ORF_ID:slr0404~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 333
Score = 86.7 bits (213), Expect = 3e-16
Identities = 40/72 (55%), Positives = 53/72 (73%)
Frame = -3
Query: 761 SNEYIVITILAAAEGEHKLPSINGSGNLKDALQKLGSIPSSRLLAVEVLWTPQNENDTLS 582
+ EYI++TI+AAA G LP++N S LK +LQ LG I S RLLA+EVLWTPQ E DTL+
Sbjct: 260 AGEYILVTIIAAALGNLNLPAVNDSSQLKQSLQTLGGISSDRLLAIEVLWTPQEEGDTLT 319
Query: 581 ERELLEDYPLLR 546
+++ +YP LR
Sbjct: 320 SNDIISEYPELR 331
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 619,180,397
Number of Sequences: 1393205
Number of extensions: 12616849
Number of successful extensions: 29376
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 28392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29358
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
