Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001720A_C01 KMC001720A_c01
(757 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563916.1| vacuolar ATP synthase subunit C, putative; prot... 214 8e-55
gb|AAO72561.1| putative vacuolar ATP synthase subunit C [Oryza s... 165 6e-40
sp|Q9NDR5|VATC_ASCSS Vacuolar ATP synthase subunit C (V-ATPase C... 91 2e-17
gb|AAB51350.1| C subunit of V-ATPase 88 1e-16
sp|Q9U5N1|VATC_MANSE Vacuolar ATP synthase subunit C (V-ATPase C... 88 2e-16
>ref|NP_563916.1| vacuolar ATP synthase subunit C, putative; protein id: At1g12840.1,
supported by cDNA: gi_12248022, supported by cDNA:
gi_16649004, supported by cDNA: gi_20259971, supported
by cDNA: gi_6636331 [Arabidopsis thaliana]
gi|12585488|sp|Q9SDS7|VATC_ARATH Vacuolar ATP synthase
subunit C (V-ATPase C subunit) (Vacuolar proton pump C
subunit) gi|25529228|pir||T52300 H+-exporting ATPase (EC
3.6.3.6) chain C, vacuolar [validated] - Arabidopsis
thaliana gi|6636332|gb|AAF20146.1|AF208261_1 vacuolar
ATP synthase subunit C [Arabidopsis thaliana]
gi|8698731|gb|AAF78489.1|AC012187_9 Identical to
vacuolar ATP sythase subunit C (DET3) from Arabidopsis
thaliana gb|AF208261. ESTs gb|AA067533, gb|Z37481,
gb|AA721838, gb|Z37180, gb|T21206 come from this gene
gi|12248023|gb|AAG50103.1|AF334725_1 putative vacuolar
ATP synthase subunit C [Arabidopsis thaliana]
gi|16649005|gb|AAL24354.1| Identical to vacuolar ATP
sythase subunit C (DET3) [Arabidopsis thaliana]
gi|20259972|gb|AAM13333.1| vacuolar ATP sythase subunit
C [Arabidopsis thaliana]
Length = 375
Score = 214 bits (546), Expect = 8e-55
Identities = 102/128 (79%), Positives = 111/128 (86%)
Frame = -2
Query: 756 VRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESI 577
VRDFE S E E RKQE+ KLVQDQESLR SLLQWCYTSYGEVF+SWMHFCAVR FAESI
Sbjct: 247 VRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRTFAESI 306
Query: 576 LRYGLPPSFLACVLAPTVKAEKKVRSILEGLSDSRNSAYWKAEEEVGGMAGLGGDPDTHP 397
+RYGLPP+FLACVL+P VK+EKKVRSILE L DS NS YWK+EE+ G MAGL GD +THP
Sbjct: 307 MRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAGDSETHP 366
Query: 396 YVSFTINL 373
YVSFTINL
Sbjct: 367 YVSFTINL 374
>gb|AAO72561.1| putative vacuolar ATP synthase subunit C [Oryza sativa (japonica
cultivar-group)]
Length = 408
Score = 165 bits (418), Expect = 6e-40
Identities = 78/114 (68%), Positives = 95/114 (82%)
Frame = -2
Query: 756 VRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESI 577
VRDFEYS E E+RK+E++KL+QDQE++R SLLQWCY SY EVF+SWMHFC VR+F ESI
Sbjct: 290 VRDFEYSSEAQESRKEELEKLMQDQEAMRASLLQWCYASYSEVFSSWMHFCLVRVFVESI 349
Query: 576 LRYGLPPSFLACVLAPTVKAEKKVRSILEGLSDSRNSAYWKAEEEVGGMAGLGG 415
LRYGLPPSFL+ VLAP+ K EKKVRSIL + +S YWK+E++V G+AGLGG
Sbjct: 350 LRYGLPPSFLSAVLAPSQKGEKKVRSILRNSVGNVHSIYWKSEDDV-GVAGLGG 402
>sp|Q9NDR5|VATC_ASCSS Vacuolar ATP synthase subunit C (V-ATPase C subunit) (Vacuolar
proton pump C subunit) gi|8570036|dbj|BAA96746.1|
vacuolar-type H+-ATPase subunit C [Ascidia sydneiensis
samea]
Length = 384
Score = 90.5 bits (223), Expect = 2e-17
Identities = 48/131 (36%), Positives = 78/131 (58%), Gaps = 3/131 (2%)
Frame = -2
Query: 756 VRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESI 577
VR+F ++ + R+ +I+K+ ++ + G LL+W ++ EVFT+W+H A+R+F ES+
Sbjct: 249 VREFNFNEQDSVVRQDQINKIASEKRKMLGPLLRWLKVNFSEVFTAWIHIKALRVFVESV 308
Query: 576 LRYGLPPSFLACVLAPTVKAEKKVRSILEGL---SDSRNSAYWKAEEEVGGMAGLGGDPD 406
LRYGLP +F A VL P K K++R +L L DS AE+ V G++ G +
Sbjct: 309 LRYGLPVNFQAVVLDPPKKNRKRLRDVLNNLYCKLDSTGLTNVDAEDSVPGLS--LGMQE 366
Query: 405 THPYVSFTINL 373
+PYV + + L
Sbjct: 367 YYPYVFYKVIL 377
>gb|AAB51350.1| C subunit of V-ATPase
Length = 382
Score = 88.2 bits (217), Expect = 1e-16
Identities = 52/138 (37%), Positives = 76/138 (54%), Gaps = 1/138 (0%)
Frame = -2
Query: 756 VRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESI 577
VRDF Y K EI KL D++ G L++W ++ E FT+W+H A+RLF ES+
Sbjct: 247 VRDFVYDESALLAGKNEIAKLESDKKKQYGLLVRWLKVNFSEAFTAWVHVKALRLFVESV 306
Query: 576 LRYGLPPSFLACVLAPTVKAEKKVRSILEGLSDSRNSAYWKAEEEVGGMAGLG-GDPDTH 400
LRYGLP +F +L P K K++R +L L +++ A+ V + GL G + +
Sbjct: 307 LRYGLPVNFQGMLLQPQKKTAKRLREVLNQLYSHLDTSI--AQGPVDDIPGLNLGQQEYY 364
Query: 399 PYVSFTINLL*ALPHTLI 346
PYV F I++ A H I
Sbjct: 365 PYVYFKISIDMADTHVRI 382
>sp|Q9U5N1|VATC_MANSE Vacuolar ATP synthase subunit C (V-ATPase C subunit) (Vacuolar
proton pump C subunit) gi|5852162|emb|CAB55498.1|
vacuolar ATPase subunit C [Manduca sexta]
Length = 385
Score = 87.8 bits (216), Expect = 2e-16
Identities = 47/132 (35%), Positives = 78/132 (58%), Gaps = 4/132 (3%)
Frame = -2
Query: 756 VRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESI 577
VR+F Y+ K EI KL+ D++ G L++W ++ E F +W+H A+R+F ES+
Sbjct: 247 VREFAYNEADLVAGKNEITKLLTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRVFVESV 306
Query: 576 LRYGLPPSFLACVLAPTVKAEKKVRSILEGL---SDSRNSAYWKAEEEVGGMAGLG-GDP 409
LRYGLP +F A +L P+ ++ +++R L L D + A+++ +AGLG G
Sbjct: 307 LRYGLPVNFQAALLVPSRRSARRLRDTLHALYAHLDHSAHHHANAQQDSVELAGLGFGQS 366
Query: 408 DTHPYVSFTINL 373
+ +PYV + IN+
Sbjct: 367 EYYPYVFYKINI 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,231,526
Number of Sequences: 1393205
Number of extensions: 14234719
Number of successful extensions: 50409
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 48831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50383
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
